SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35289

Length: 622 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35289 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent helicase BRM [Arabidopsis thaliana] sp\|Q6EVK6.1\|BRM_ARATH RecName: Full=ATP-dependent helicase BRM; Short=AtBRM; AltName: Full=Protein BRAHMA emb\|CAG28313.1\| putative SNF2 subfamily ATPase [Arabidopsis thaliana] gb\|AEC10632.1\| ATP-dependent	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	atp-dependent helicase brm	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	93%
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	93%
Blast2go	DNA binding	GO:0003677	Molecular Function	93%
Blast2go	catalytic activity	GO:0003824	Molecular Function	93%
Blast2go	cytosol	GO:0005829	Cellular Component	93%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
278	33		66		0.997452
453	75	25			0.996479
455	75	25			0.996481
457	75			25	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain