SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35266

Length: 509 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene35266
CGTCGTGACCTTGGCTGTCACTCACTTACTGTGGCACAAACGTTGCGTGATTCTCTTCCAGCATCTGATAAATCCTTGAGTAGATTGCTTTGTGAGGTCCCATTTCTTCCACACGCAGCTATAAAAATATTGGAGGATCTGTGCTATGCTGGTAGACTTGACAGGGATGGTAAGGAAGTGCTAAGTGGTGATCGAGTTACTCAAGGTTTAAGTGCTGTATGGAGCCTAATCTTGCTACGACCGACTGCAAGGGTTATCTGCTTGGAGATTACCTTACAGAGTGCAGTACATCGAATTGACGAAGTACGGAATAAGGCAATTCGTCTGGTAGCTAACAAGTTGTACCCGTTAAGCTATCTTTCACAAAATATAGAGGAGTTTGCTACAAAGAGATTGCTATCGGTGGTGGATGGTCTTCAGATTGGTGATGGCATGGATATTGATGAATCAAGAGTATCTGTAAAAGAGGATGGTAGTCAACATAATCTATCAAATGGAGTTCCCAAAAT

Ace file of the UniGene sp_v2.0_unigene35266 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	symplekin [Arabidopsis thaliana] emb\|CAB81923.1\| putative protein [Arabidopsis thaliana] gb\|AED90339.1\| symplekin [Arabidopsis thaliana]	-	-	1.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	0.0	72%
Blast2go	RNA processing	GO:0006396	Biological Process	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SY11

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 169 - 1332

Fln protein: RRDLGCHSLTVAQTLRDSLPASDKSLSRLLCEVPFLPHAAIKILEDLCYAGRLDRDGKEVLSGDRVTQGLSAVWSLILLRPTARVICLEITLQSAVHRIDEVRNKAIRLVANKLYPLSYLSQNIEEFATKRLLSVVDGLQIGDGMDIDESRVSVKEDGSQHNLSNGVPK

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTACTGTGGCACAAACGTTGCGTGATTCTCTTCCAGCATCTGATAAATCCTTGAGTAGATTGCTTTGTGAGGTCCCATTTCTTCCACACGCAGCTATAAAAATATTGGAGGATCTGTGCTATGCTGGTAGACTTGACAGGGATGGTAAGGAAGTGCTAAGTGGTGATCGAGTTACTCAAGGTTTAAGTGCTGTATGGAGCCTAATCTTGCTACGACCGACTGCAAGGGTTATCTGCTTGGAGATTACCTTACAGAGTGCAGTACATCGAATTGACGAAGTACGGAATAAGGCAATTCGTCTGGTAGCTAACAAGTTGTACCCGTTAAGCTATCTTTCACAAAATATAGAGGAGTTTGCTACAAAGAGATTGCTATCGGTGGTGGATGGTCTTCAGATTGGTGATGGCATGGATATTGATGAATCAAGAGTATCTGTAAAAGAGGATGGTAGTCAACATAATCTATCAAATGGAGTTCCCAAAAT

Fln Alignment:

AllPineV4_c26700___LTVAQTLRDSLPASDKSLSRLLCEVPFLPHAAIKILEDLCYAGRLDRDGKEVLSGDRVTQGLSAVWSLILLRPTARVICLEITLQSAVHRIDEVRNKAIRLVANKLYPLSYLSQNIEEFATKRLLSVVDGLQIGDGMDIDESRVSVKEDGSQHNLSN
D7SY11_______________LTVAETLRDSFPASDKSLSRLLAEVPYLPKSVFKLLDCLCSPGNSSKDEKELLSGDRVTQGLSAVWNLILLRPPIRDACLKIALQSAVHHSEEVRMKAIRLVANKLYPLSSVAQQIEDFANEMLLSVINGAHATDRTETEGSSTELQKDSNLEKSSD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
267		16	83		0.994512
268		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain