SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35232

Length: 1058 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35232 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	5.0e-33	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 30 aas, your sequence is shorter than subject: 319 - 618

Fln protein: VVTLAVTHLSHCSSTCSIPLPGNITTLQLLELSGCAQMGTLPAQVEHQKSLELLNLVGTNLKELTTNAQTAWLSNLKYLFLGSPLLKELPPSFGCLLSLKVLLLHGCHELKHLPDSVGLLTQLTTLEISKCGIQELPDLMEMNNLGSLRVRDCPLRELPFKESAPSRKRKRRATEKGLIRLNFLELYFTEVREVSFPEGVCINLQTLSIMCCNDLVKVGSLPATVERLILRGCGALGKVEGLSGLAEPWWVDMRGCCNIEMGEVPHFRNTTRLFIPTDTCKPEEEEEVEQQMAALQEGVLPYRVAVDVVSSRVFVTRL*

Protein Length: 320

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGAGTCATTGTAGCAGTACGTGTTCGATTCCACTACCTGGAAATATCACCACGCTTCAATTGTTAGAATTATCAGGATGTGCCCAAATGGGAACATTGCCCGCCCAAGTGGAACATCAGAAGTCCTTGGAATTGTTGAATCTGGTGGGTACAAACTTAAAAGAGTTGACCACTAATGCGCAGACTGCATGGCTAAGCAATTTGAAATATCTGTTCTTAGGAAGTCCTTTGTTGAAAGAGCTGCCACCTTCGTTCGGATGCCTATTGAGTTTGAAGGTACTGCTGCTCCATGGATGCCACGAATTGAAACACTTGCCAGATTCAGTCGGACTGTTGACTCAGTTGACTACGTTGGAGATATCAAAATGTGGGATACAAGAGTTACCAGATCTCATGGAGATGAACAATCTCGGTTCTTTAAGAGTACGCGATTGTCCGCTGCGTGAACTGCCATTTAAGGAGTCTGCCCCGAGCAGAAAGAGAAAGCGCAGAGCAACGGAGAAAGGCCTGATTCGGCTCAACTTCTTAGAGTTGTACTTCACAGAAGTAAGAGAGGTATCCTTTCCTGAAGGTGTGTGCATCAACCTTCAAACCCTCAGCATCATGTGTTGTAATGATTTGGTAAAGGTTGGTTCATTGCCAGCAACAGTAGAGCGTCTGATTTTGAGGGGTTGCGGTGCGTTGGGAAAAGTAGAAGGGCTTAGTGGGTTGGCAGAACCTTGGTGGGTAGACATGCGAGGGTGTTGTAATATAGAAATGGGGGAGGTGCCACATTTCAGGAATACCACGCGTTTATTCATTCCAACTGACACTTGCAAACCCGAGGAGGAGGAGGAGGTGGAGCAGCAGATGGCAGCTTTGCAGGAGGGTGTCCTGCCGTATAGGGTTGCAGTGGACGTGGTGAGCAGTAGAGTCTTCGTTACAAGGCTTTAG___TTTGTGGTGGAGTGTAAATATGAAAGGTATCTTAGTTGTGTTATATATTTATGAATTTTAAATAAAAATAAATAAATGAGAAGCAATTACATTGAAAACA

Fln Alignment:

AllPineV4_c26571___VVTLAVTHLSHCSS-TCSIPLPGNITTLQLLELSGCAQMGTLPAQVEHQKSLELLNLVGTNLKELTTNAQTAWLSNLKYLFLGSPLLKELPPSFGCLLSLKVLLLHGCHELKHLPDSVGLLTQLTTLEISKCGIQELP-DLMEMNNLGSLRVRDCPLRELPFKESA---------PSRKRKRR-------ATEKGLIRLNFLELYFTEVREVSFPEGVCINLQTLSIMCCNDLVKVGSLPATVERLILRGCGALGKVEGLSGLAEPWWVDMRGCCNIEMGEVPHFRNTTRL-FIPTDTCKPXXXXXXEQQMAALQ
B8LMZ7_______________LIRLKYLNLEYCSDLTMSEETFANISTLEYLNLSDCKSVQVLPRQLAHQPSLEILSLSETNLKELPGDIGN--LSSLEELSLGNSLLEMLPCSLGHLSSLKKLWVCDSPELKSLPDSLGQLTQLSTLWVGGCGIQSLPPEVAKMNNLVELRVRECPLRELLLKNQAEGEEETLADPTGRRESNLDSSVANAQQQCMYRLGYLQLWQTEISHISFGEGVCPNLKQLDIRSCAHLVDVGALPPTLIRLKLYKCRRLSKIEGICNLTKLRKLNIRKC--IEVEDLPSLERLTSLEKFSADECSKLKRIKGLGQLAALR

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
301			25	75	0.996473
309		75		25	0.996473
310	50	25	25		0.995533
376	16		83		0.994512
379			83	16	0.994512
381		16		83	0.994512
382		83		16	0.994512
392		16		83	0.994512
398			16	83	0.994512
404	71		28		1.0
429	83			16	0.994512
430		16		83	0.994512
434			83	16	0.994512
436			50	50	1.0
437			83	16	0.994512
441		33	66		1.0
443	33			66	1.0
444		16		83	0.994512
445		16	83		0.994512
464		20		80	0.995493
473		25	75		0.996473
474	25		75		0.996473
488		20		80	0.995493
495	60	40			1.0
509			75	25	0.996473
648		33	66		0.997467
649		25	75		0.996483
650		50		50	1.0
651	75		25		0.996483
652	75			25	0.996486
653	33	66			0.997458
654	33			66	0.997458
758		66	33		0.997476
787			66	33	0.997476
839		33		66	0.997476
843		66	33		0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
196	211	CCT CCT CCT CCT CCT C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain