SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35085

Length: 1019 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35085

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENTH/VHS family protein [Arabidopsis thaliana] emb\|CAB62324.1\| putative protein [Arabidopsis thaliana] gb\|AAL32940.1\| putative protein [Arabidopsis thaliana] gb\|AAM91150.1\| putative protein [Arabidopsis thaliana] gb\|AEE78170.1\| ENTH/VHS family protein [Ar	-	-	2.0e-33	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Epsin domain, N-terminal	IPR001026	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLE6

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 339 - 402

Fln protein: VVTLAVTQTDVTEAELMTEEATNSDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLAVSDTKSWREAFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFEHVDELGFDWGQSIQRKAERILELLNQKKLLKEERDRARRVSRGITGSGSFSSRAASSPAFESFESTFNDIPEGASHEEGLNETTQMKTKKYDISKDEGASYEEEVNETTQMKTKNYENDIKIYSKGYSSPGISTNITSQDEELSSGKVYTNNIDPTSDHVGSSETKDINNPYHSNTEWQPFQGRKLFTSTSHYFRKPDVVNLMSDQDKDQIPVQANGIPPKTNTSDRFHAYGYR

Protein Length: 340

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACGGATGTCACTGAGGCAGAATTGATGACAGAGGAAGCAACCAACAGTGATCCATGGGGACCGGAGACCCGTAGAATGGCTGAGATCTCTCGTGCTGCCTTTGAAGTGGACGATTACTCGAGAATTGTCAACATTTTACATAAGAGGTTGGCTGTCTCGGATACGAAGAGTTGGAGAGAGGCTTTCAAAACATTAGTACTTTTGGAGTACCTGTTAACACATGGTCCAGAGAGTTTTGCAGCAGACTTTCGAAGTGAAAAGGATGTTCTTCATCAACTCACTCATTTTGAGCATGTGGATGAGCTAGGGTTTGATTGGGGCCAGAGTATCCAAAGAAAAGCAGAGAGAATCTTAGAACTTCTTAACCAAAAGAAACTGCTGAAAGAAGAGCGCGATCGCGCTCGGAGAGTTTCGCGTGGAATAACGGGATCCGGAAGCTTTTCTTCAAGAGCAGCCTCTTCACCTGCTTTTGAAAGTTTTGAATCAACTTTCAATGATATACCAGAGGGAGCATCACATGAAGAGGGACTTAACGAGACTACACAAATGAAAACCAAGAAGTATGATATATCAAAGGATGAGGGGGCATCATATGAAGAGGAAGTTAATGAGACTACACAAATGAAAACCAAGAACTATGAGAATGACATCAAAATATATTCAAAGGGATATTCTAGCCCTGGAATTTCAACCAACATTACTAGTCAAGATGAAGAGTTAAGTTCTGGCAAAGTATATACAAACAATATTGACCCAACATCTGATCATGTGGGAAGTTCTGAAACTAAAGATATTAATAATCCATATCATTCCAACACTGAATGGCAACCATTTCAAGGAAGAAAGCTGTTTACATCTACTAGCCATTATTTTAGAAAGCCTGATGTTGTTAACTTGATGAGTGATCAAGATAAGGACCAAATTCCAGTCCAAGCTAATGGTATCCCTCCCAAGACTAATACTTCTGATAGATTTCATGCATATGGTTATAGGC

Fln Alignment:

AllPineV4_c25959___TLAVTQTDVTEAELMTEEATNSDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLAVSDTKSWREAFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFEHVDELGFDWGQSIQRKAERIXXXXXXXXXXXXXRDRARRVSRGITXXXXXXXXXXXXXXXXXXXXTFNDIPE--GASHEEGLNETTQMKTKKYDISKDEGASYEEEVNETTQMKTKNYENDIKIYSKGYSSPGISTNITSQDEELSSGKVYTNNIDPTSDHVGSSETKDINNPYHSNTEWQPFQGRKLFTSTSHYFRKPDVVNLMSDQDKDQIPVQANGIPPKTNTSDRFHAYGYR
B8LLE6_______________TARLVLTDVTEAELMTEEATNNDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLSVLDTKSWRETFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFQHVDDLGFDWGQSIQRKAERILELLNQEKLLKEERNRARRVSRGITGSGSVSSRPTSLPAFESSESTFNDIPKELGASYEEGVDQTTEMKTKK-------------------------YENGIKIYSRGFSSPGISTNITTQDEELSFGEAHTHTISPRSDNVGSSETKNDNNAYHSNTEWQPFQGRKLVTSTGHSFRKPDVVNLMSDQDKHRIPVQANSTPPKTNTSDGFHAYGYR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
659	75			25	0.996474
660	75		25		0.996474
661	75		25		0.996474
662		75	25		0.996473
672		25		75	0.996474
928			25	75	0.996473
973		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain