SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35078

Length: 1781 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35078

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S1I8_RICCO	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	udp-glycosyltransferase 73b4	-	-	52%

Source	GOs	Term	Type	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	52%
Blast2go	quercetin 7-O-glucosyltransferase activity	GO:0080044	Molecular Function	52%
Blast2go	quercetin 3-O-glucosyltransferase activity	GO:0080043	Molecular Function	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMC6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 39 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 15, No stop codon before M and low homology subject, your sequence is shorter than subject: 457 - 527

Fln protein: MAEGGAEIVAIPFNGQGHVFPCIELCKRLAARGLHITIIADSSVSATLRTVADQSSSSGLRITFIELESEEEEEELGDSAPHPDHHGHDHMEQQQQKAMEEILQKKFSTPPLCIIGDVMMGWVPELCKNLGIPRVSFFTSGACSLAFEYAIWKHRSSLDQLQHDDKQAAFLVPGFPPSMSITPSDLQHIAPPGGGGPPPPPGRGHPPLPAGGPQGSKPKFPPGRRPPPPPPPGSKSHSPPWMNGIKDCVGILVNTCEELESPFIEYIGKEIEIPIWAAGPFLPASSFLDQSGSGTTVTHDSAIRGKKSSIDEEQCLEWLNSKAPASVIFVSFGSEVGPSVEETRELAHGLEAAQKPFIWVLQDHYHGHPPPPDHPPCDQGSNEGEGAEDMLPEGFEDRNEGLGLIIRGWAPQLLILISSLHWRIFVALWVEFHSRKHRPRRSNLGMAHQRRSALQC*

Protein Length: 458

Fln nts: CGTCGTGACCTTGGCTGTCATTGGATCGATCTACACAAAT_-_ATGGCGGAAGGAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGGCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAACTGGAATCCGAGGAGGAGGAGGAGGAATTGGGGGATTCAGCCCCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGTTCTCAACTCCACCTCTCTGCATCATTGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAATTTGGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCTCTTGATCAACTTCAACATGATGACAAGCAGGCCGCCTTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCAATTACTCCCTCCGATTTGCAGCATATCGCTCCTCCCGGAGGTGGCGGCCCTCCTCCGCCGCCTGGACGAGGGCATCCACCTCTTCCTGCAGGTGGGCCTCAAGGTTCGAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCCTCCTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATAGCGCAATCCGTGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGGAATGGTTGAATTCCAAGGCGCCTGCATCTGTTATCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCATGGACTAGAAGCTGCACAGAAGCCATTCATTTGGGTTTTACAGGATCACTACCATGGTCATCCTCCCCCACCTGATCATCCTCCTTGTGATCAGGGTAGTAATGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAAACGAGGGACTGGGTTTGATCATTCGTGGTTGGGCGCCTCAGCTGCTCATACTCATCTCATCCCTCCACTGGAGGATTTTTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATAGGCCACGGCGTTCCAATCTTGGCATGGCCCATCAGAGGAGATCAGCATTACAATGCTAAATTTCTCGTCAAGGATCTCCAGATTGCAGCCATGATCGACAAGCCAACACATGATGGGCTGGTGAGCAGGAAGGAAATTGACAATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAACCCAGTTAAGAGAAAGAGCAGCCTCTCTGAAACTCAAGTTCCGCTCTACCTGTTTCTTATCcTCCCAAgCCGTGATAGACACGTTTCTTGaTAACCTTTTATCGAAGCAATGTAAGTAGTTGGAATGAATGTCAGCGTGCAAGTGCATGATCCGGAAGAATAAGCAGTGTAAGTTGCTGAAATGAATGTCAGCGTGCAATTGCATGATTCGGAAGAATAATGAAATGGgTTACTAAAAATGTTAtCCGAAA

Fln Alignment:

AllPineV4_c25913___TNMAEGGAEIVAIPFNGQGHVFPCIELCKRLAAR-GLHITIIADSSVSATLRTVADQSSSSGLRITFIXXXXXXXXXXXG--------DSAPH----PDHHGHDHMEQQQQKAMEEILQKKFSTPPLCIIGDVMMGWVPELCKNLGIPRVSFFTSGACSLAFEYAIWKHRSSLDQLQHDDKQA-AFLVPGFP
B8LMC6_______________TTTREFKHHVVMFPFMAQGHIIPFLELAKLLAKRTGFAITI---ANTPLNIRSLRPEIDSTGAGLDIRLAELPFSTAGHGLPPQTENTDFLPYNLFFPFLQASEQLEPHFERLICRICQEDGGRLPLCIISDMAFGWTLDVGNRLGIPRIQFCTAGAYGTSVYYSLWTH------LPHNQTHADDFVLPDMP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
996	80		20		0.995493
1022		25		75	0.996473
1428			44	55	1.0
1593		85	14		0.993541
1605		50	50		1.0
1612	25		75		0.996473
1672	25		75		0.996473
1722		50		50	1.0
1724			75	25	0.996473
1745			50	50	1.0

SSRs (tot: 3)

Start position	End position	Sequence	Length
248	264	GAG GAG GAG GAG GAG GA	17
315	328	AGC AGC AGC AGC AG	14
722	736	CCT CCT CCT CCT CCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain