SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34993

Length: 865 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene34993

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulation receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9S479_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	receptor-like kinase	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 99 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 207 - 340

Fln protein: FSGIHSNTTADDGLCATAEVMGKSTYGTV*KATLEDGNQVAVKKLRERIAKNQR*FETEANALGKIRHLxxxFMPSGNLAAFLRARGTETPLNWHTRMEIAIRAAQGLAYLHINENIIHGNVTSSNILFDANLNAKIADFGLSRLMTTAANSNVIATAGAPELTKLKKVTTKTDVYSFRIVLLELLAGEAPREPMTADSEMDLPDWV

Protein Length: 208

Fln nts: AATGTCAATTGGTGCATGGCAAGGACTTGCTTATCTACGCCGCAATGAGAACATCATTCATGGAAATTGCAATTGGTGCATGGCAAGGACTTGCTTATCTACGCCGCAATGAGAACATCATTCATGGAAATCTCACTTCCAGCAACATCCTGCTTGATGCAATCATGAATGACAAGATTGCAGATTTGCTTGTCTAGGTTGATGACAACTGCTGCCAATTCCAATGTAGTTGCCACAACAG_-_ATGATTTTCTGGTATTCACAGCAATACCACAGCGGATGATGGACTTTGTGCAACTGCAGAAGTAATGGGCAAGAGCACTTATGGAACTGTGTAAAAGGCTACTTTGGAGGACGGGAATCAAGTGGCAGTGAAGAAGCTGAGGGAGCGAATAGCAAAGAATCAAAGATAATTTGAGACAGAAGCTAATGCTCTTGGGAAGATCAGGCATCTTxxxxxxxxxTTCATGCCTAGTGGAAACCTTGCAGCATTCCTTCGTGCAAGAGGCACAGAGACACCTTTGAATTGGCACACCAGAATGGAAATTGCAATTCGTGCAGCGCAAGGACTTGCTTATCTACACATCAATGAGAACATCATTCATGGAAATGTCACTTCCAGCAACATCCTGTTTGATGCAAACTTGAATGCCAAGATTGCAGATTTTGGCTTGTCTAGGTTGATGACAACTGCTGCCAATTCTAATGTGATTGCCACAGCAGGGGCTCCTGAACTCACAAAACTGAAGAAAGTCACCACCAAGACAGATGTATACAGCTTTAGGATTGTCTTGCTGGAGCTTCTGGCTGGCGAGGCACCACGAGAACCCATGACCGCAGACAGTGAGATGGACCTTCCTGATTGGGTT

Fln Alignment:

AllPineV4_c25518___FSGIHSNTTADDGLCATAEVMGKSTYGTV*KATLEDGNQVAVKKLRERIAKNQR*FETEANALGKIRHLNLxxxxxxxxxxxxxxxxFDFMPSGNLAAFLR-ARGT-ETPLNWHTRMEIAIRAAQGLAYLHINEN--IIHGNVTSSNILFDANLNAKIADFGLSRLMTTAANSNVIATAGAPEXXXXXXXXXXXDVYSFRIVLLELLAGEAPREPMTADSEMDLPDWV
B8LN40_______________FEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKD-VAANRKDFEQQMELVGRIRHRNLxxxxxxxxxxxxxxxxYDYMPTGSLSALLHGSRGSGRTPLDWDTRMRIALGAARGISHIHEEGGGKFTHGNIKSSNVLLTTDLDGCVSDFGLVPLFSAAAAANRIAGYRAPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
102	20	80			0.995493
105	40	60			1.0
145	25	75			0.996473
146	75		25		0.996474
277			60	40	1.0
283		40		60	1.0
284		40	60		1.0
325			25	75	0.996473
356	50		50		1.0
410	40			60	1.0
432	50	50			1.0
497	50		50		1.0
505	50		50		1.0
528	25		75		0.996473
561	20	80			0.995493
566	20		80		0.995493
586		75	25		0.996473
594	75			25	0.996473
595	75			25	0.996473
690	83		16		0.994512
691		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain