SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34903

Length: 306 nt

Origin of reads: Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene34903
CGCGTGACCTTGGCTGTCACTCATTTTTCCCATATAGTGTTGATGCTCCAAAGAGGCTTGTTCTTCAACACACGTTCCAAACTACAGGGAATAAATTATCACATTCTTCATACGATATGGGAATTGCAGATGCCAATACATTGTCTTTTGTATTGAAAAATGCACCTGAAGCAGCAAAGCAGTTGAATATAGACCCAATGTTTTACAAGGAAACAGCAAATTATTCTGATGAAGGAACATTTATGGGATTATATCCAATTTCTTGTTTTTTTCCTCGAAATTGACGTTTCCTGGAGCAACAACATT

Ace file of the UniGene sp_v2.0_unigene34903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T1F15.12 protein n=1 Tax=Arabidopsis thaliana RepID=O64804_ARATH	-	-	4.0e-19	51%
FL-Next	tr=T1F15.12 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	zn-dependent exopeptidase-like protein	-	-	2.29554e-22	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	2.29554e-22	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M28	IPR007484	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O64804

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 138 aas, your sequence is shorter than subject: 94 - 840

Fln protein: RDLGCHSFFPYSVDAPKRLVLQHTFQTTGNKLSHSSYDMGIADANTLSFVLKNAPEAAKQLNIDPMFYKETANYSDEGTFMGLYPISCFFPRN*

Protein Length: 95

Fln nts: CGCGTGACCTTGGCTGTCACTCATTTTTCCCATATAGTGTTGATGCTCCAAAGAGGCTTGTTCTTCAACACACGTTCCAAACTACAGGGAATAAATTATCACATTCTTCATACGATATGGGAATTGCAGATGCCAATACATTGTCTTTTGTATTGAAAAATGCACCTGAAGCAGCAAAGCAGTTGAATATAGACCCAATGTTTTACAAGGAAACAGCAAATTATTCTGATGAAGGAACATTTATGGGATTATATCCAATTTCTTGTTTTTTTCCTCGAAATTGACGTTTCCTGGAGCAACAACATT

Fln Alignment:

AllPineV4_c25258___FFPYSVDAPKRLVLQHTFQTTG-NKLSHSSYDMGIADANTLSFVLKNAPEAAKQLNIDPMFYKETANYSDEGTFMGLYPISCFFPRN*RF
O64804_______________FFPYSKDAPKRVVLQHTFISTGGNEITGSSYDLAVIDSNSMEFIFKHAPEVAKELHVGPSFSLGNAEASPQEAWMALFPISCVLTTNGRF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
60		66	33		0.997456
79		66		33	0.997476
94		33		66	0.997476
103	66			33	0.997456
129		33		66	0.997457
190	33			66	0.997455
207	33		66		0.997457

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain