SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34864

Length: 1013 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene34864

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EamA domain containing protein	-	-	5.0e-08	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	auxin-induced protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWT4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 35 aas, putative chimeric sequence, your sequence is shorter than subject: 293 - 392

Fln protein: LERKVRPKLTFYIFCQIFVLGLLGPVIDQNFSYLGLKLTSPTYACAVSNILPCITFVIALLLRMESVNIRKVRSGAKVVGTIVCVGGTILMTFYKGPIVRMFWFLHHQSSEHNQTSAPAATATGSKDWIMGSLLMFGATFAWSILFILQSAVLKKISCSTFTCNVNMFSRDVTGNSSELSSRT*SFTVGVRGIVASAVAYYVQGLCIRVKGPVFTTAFSPLMMIIAAIMGSAILSENIYLGSVLGGVVIAIGLYAVLWGKLKDGKASTDENCRKPFPVLKKFSHKMQLRKKT*

Protein Length: 294

Fln nts: CCTTGAAAGGAAGGTGCGGCCGAAACTCACATTTTACATTTTCTGCCAAATTTTTGTGCTGGGCTTGTTGGGGCCTGTGATAGACCAGAATTTCTCTTACCTGGGTTTGAAATTAACTTCTCCAACATATGCGTGTGCAGTCAGTAATATACTCCCGTGTATTACTTTTGTGATTGCTCTCCTGCTGAGGATGGAGAGCGTGAATATAAGAAAGGTACGCAGCGGAGCAAAGGTGGTGGGAACTATTGTGTGCGTAGGGGGAACAATATTGATGACGTTTTACAAAGGTCCTATTGTTCGCATGTTCTGGTTTCTACATCATCAATCCTCCGAGCATAACCAGACATCTGCACCAGCAGCAACTGCCACTGGTAGTAAAGACTGGATCATGGGCTCTCTTTTGATGTTTGGCGCAACTTTTGCGTGGTCGATCCTCTTTATTTTACAGTCTGCAGTCCTCAAAAAAATATCCTGCTCAACTTTCACTTGCAATGTTAATATGTTTTCTAGGGACGTTACAGGCAACAGTTCTGAGCTTAGCTCTCGTACGTGATCCTTCACAGTGGGCGTTAGGGGGATTGTGGCATCAGCGGTAGCATATTATGTGCAAGGTCTGTGCATCCGCGTAAAAGGGCCTGTATTTACCACAGCATTCAGTCCGTTGATGATGATAATCGCGGCAATCATGGGATCTGCTATTCTCTCTGAAAACATCTATTTGGGCAGTGTGCTGGGTGGAGTCGTGATCGCAATAGGGTTGTACGCTGTTCTGTGGGGAAAATTGAAGGATGGCAAGGCCTCAACGGATGAAAATTGTCGGAAGCCCTTCCCAGTTCTGAAGAAATTCTCCCACAAGATGCAATTAAGGAAGAAGACATAG___AAGCTGCATCAAACGACCCCATGAATAAGGGTCTCGAACCTCTTGATTAGATGCAATGAACAGGGTTCAGTGAATAGAGTACAATTTGTCAGTTGGCATATGATAATGTAAATCGTCGCTATCGTTATTATTA

Fln Alignment:

AllPineV4_c25146___LERKVRPKLTFYIFCQIFVLGLLGPVIDQNFSYLGLKLTSPTYACAVSNILPCITFVIALLLRMESVNIRKVRSGAKXXXXXXXXXXXXLMTFYKGPIVRMFWFLHHQSSEHNQTSAPAATATGSKDWIMGSLLMFGATFAWSILFILQSAVLKKIS---------CSTFTCNVNMFSRDVTGNSSE--LSSRT*SFTVGVRGIVASAVAYYVQGLCIRVKGPVFTTAFSPLXXXXXXXXXXXXLSENIYLGSVLGGVVIAIGLYAVLWGKLKDGKASTDEN
A9NWT4_______________IERKVRPKLTFSIFCQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVIALLFRMENVNIKKLRSQAKIVGTIVCVGGAMLMTLYKGPIVKMVWSAHHQSP---QTS--AAAAIDNKNWIIGSVLIIAATLAWSGLFILQAAVLKKYSAQLSLATLICFLGTLQATVLSLAVVRDPSQWALGWDLNLLTAVYSGVVASAIAYYVQGLCMRVKGPVFATAFSPLMMIIVAIMASIILAENIFLGSVLGGVLIVIGLYAVLWGKVKDSKILTDKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain