SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34832

Length: 254 nt

UniGene Fasta

>sp_v2.0_unigene34832
CGTCGTGACCTTGGCTGTCACTCAATGGGAAGAGCAGATCAAGAGGCTTCATTTGCTACTGACTGTAATGGAATCTGCTATGGATGTTCCTGCCAACTTAGAAGCACGGCGCCGTATTGCCTTCTTTACAAATTCTCTTTTCATGGATATGCCCAATGCTCCCAAAGTCCGAAATATGCTGTCTTTCAGTGTCTTAACTCCTTATTATAAAGAAGAAGTTCTGTATTCACTGCATGAACTTCAGCTGGAGAATG

Ace file of the UniGene sp_v2.0_unigene34832

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Callose synthase 5 n=5 Tax=Arabidopsis RepID=CALS5_ARATH	-	-	1.0e-29	77%
FL-Next	sp=Callose synthase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	5-like protein	-	-	4.98989e-37	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	4.98989e-37	88%
Blast2go	pollen wall assembly	GO:0010208	Biological Process	4.98989e-37	88%
Blast2go	microsporogenesis	GO:0009556	Biological Process	4.98989e-37	88%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	4.98989e-37	88%
Blast2go	pollen germination	GO:0009846	Biological Process	4.98989e-37	88%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3B724

Fln msg: Distance to subject end: 828 aas, your sequence is shorter than subject: 84 - 1923

Fln protein: VVTLAVTQWEEQIKRLHLLLTVMESAMDVPANLEARRRIAFFTNSLFMDMPNAPKVRNMLSFSVLTPYYKEEVLYSLHELQLEN

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGGAAGAGCAGATCAAGAGGCTTCATTTGCTACTGACTGTAATGGAATCTGCTATGGATGTTCCTGCCAACTTAGAAGCACGGCGCCGTATTGCCTTCTTTACAAATTCTCTTTTCATGGATATGCCCAATGCTCCCAAAGTCCGAAATATGCTGTCTTTCAGTGTCTTAACTCCTTATTATAAAGAAGAAGTTCTGTATTCACTGCATGAACTTCAGCTGGAGAATG

Fln Alignment:

AllPineV4_c25043___LAVTQWEEQIKRLHLLLTVMESAMDVPANLEARRRIAFFTNSLFMDMPNAPKVRNMLSFSVLTPYYKEEVLYSLHELQLEN
Q3B724_______________VATAQWHEQISRLHLLLTVKESAMDVPTNLEAQRRIAFFTNSLFMDMPRAPRVRNMLSFSVLTPYYSEETVYSKNDLEMEN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
59	33	66			0.997464
62	66			33	0.997459
139			33	66	0.997476
142		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain