SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34759

Length: 566 nt

UniGene Fasta

>sp_v2.0_unigene34759
ATGGGCACTGCCACTGAGTAGGGGTTCACAGATGATTCTCCATTATTATATTCAAAAGGTTTTTTAATCTTGCAATGCAGTATGTCATGGACTTAGTATGGGAGGTTGAGGTTGGTACATCTTGACTTTAAACAATATTCACTGAATTTTAAATCTAAATCACCCCAGGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACCTCCGAGCAACTGGCTAATTTAATAGGGGAGACAGGCACAACACTATTGTGTTTTGCATAGGAGGTCCTTATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATGTCACTATTAGACTTTCCTCCATGGTTTTAAACCATCAGATTGCGCTCATTGTGCTGATTGAGCAATTATACAGGTTTGCTGATAGTCTAATTTTAGCATATGTGACATATTTCATGCCTTCATTATAAATCATCTCGTGTTTAATTATTAATGGATGCAATGCTAGTCTAAAACAACACTGTATAAGATATTGTGAGTATTTTTTGTTCTCATTCATTTCTGTTGTGTAAGCATTGAGGTTGCTAAGGCACAACTAA

Ace file of the UniGene sp_v2.0_unigene34759

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA methyltransferase [Arabidopsis thaliana] sp\|Q9LXB4.1\|Y5620_ARATH RecName: Full=Putative RNA methyltransferase At5g10620 emb\|CAB89381.1\| putative protein [Arabidopsis thaliana] gb\|AED91572.1\| putative RNA methyltransferase [Arabidopsis thalian	-	-	5.0e-18	72%
FL-Next	sp=Putative RNA methyltransferase At5g10620; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	protein	-	-	4.05136e-20	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	SPOUT methyltransferase, predicted	IPR003742	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LXB4

Fln msg: Overlapping hits, possible frame ERROR between 246 and 231, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 146 - 193

Fln protein: MGTATE*GFTDDSPLLYSKGFLILQCSMSWT*YGRLRLVHLDFKQYSLNFKSKSPQVVLLDENGKDITSEQLANLIxxxxxxxIVFCIGGPYGHGQQLRMRADVTIRLSSMVLNHQIALIVLIEQLYRFADSLILAYVTYFMPSL*

Protein Length: 147

Fln nts: ATGGGCACTGCCACTGAGTAGGGGTTCACAGATGATTCTCCATTATTATATTCAAAAGGTTTTTTAATCTTGCAATGCAGTATGTCATGGACTTAGTATGGGAGGTTGAGGTTGGTACATCTTGACTTTAAACAATATTCACTGAATTTTAAATCTAAATCACCCCAGGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACCTCCGAGCAACTGGCTAATTTAATAxxxxxxxxxxxxxxxxxxxxxATTGTGTTTTGCATAGGAGGTCCTTATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATGTCACTATTAGACTTTCCTCCATGGTTTTAAACCATCAGATTGCGCTCATTGTGCTGATTGAGCAATTATACAGGTTTGCTGATAGTCTAATTTTAGCATATGTGACATATTTCATGCCTTCATTATAAATCATCTCGTGTTTAATTATTAATGGATGCAATGCTAGTCTAAAACAACACTGTATAAGATATTGTGAGTATTTTTTGTTCTCATTCATTTCTGTTGTGTAAGCATTGAGGTTGCTAAGGCACAACTAA

Fln Alignment:

AllPineV4_c24825___VVLLDENGKDITSEQLANLIxxxxxx----IVFCIGGPYGHGQQLRMRADVTIRLSSMVLNHQIALIVLIEQLYR
Q9LXB4_______________VVVLDERGRDIDSEQMAELLxxxxxxGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain