SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34734

Length: 674 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene34734 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transmembrane amino acid transporter family protein [Arabidopsis thaliana] ref\|NP_001030795.1\| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gb\|AAL16119.1\|AF428287_1 AT3g30390/T6J22_16 [Arabidopsis thaliana] dbj\|BAB02239.1\| un	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	amino acid transporter	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	0.0	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
211	25	75			0.996473
214	75		25		0.996473
325			80	20	0.995494
328	80		20		0.995493
329			80	20	0.995493
330		80	20		0.995493
331	20			80	0.995493
334			20	80	0.995493
335		20		80	0.995493
338	20			80	0.995493
340			20	80	0.995493
341	80			20	0.995493
342		20		80	0.995493
343	20		80		0.995493
344		20	80		0.995493
347		20		80	0.995493
502	33	66			0.997458

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain