SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34723

Length: 452 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene34723
ATATCCTACATGGTTAGAGATCGAGGGTTGAGCCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGGACTTGAAGAATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTGGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGGCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCACATTTGCTTTCCATGAGCAAAGAAGGCGGAGCAGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGAT

Ace file of the UniGene sp_v2.0_unigene34723 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	7.0e-34	74%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	beta galactosidase 9	-	-	1.11547e-38	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.11547e-38	82%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.11547e-38	82%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.11547e-38	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU8

Fln msg: Distance to subject end: 742 aas, your sequence is shorter than subject: 117 - 836

Fln protein: MGSIAFGTNPGGKIMRDSRGSACAFIILLVLSGSNFIAVQCLNKPFNVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYD

Protein Length: 118

Fln nts: ATATCCTACATGGTTAGAGATCGAGGGTTGAGCCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGGACTTGAAGA_-_ATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTGGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGGCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCACATTTGCTTTCCATGAGCAAAGAAGGCGGAGCAGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGAT

Fln Alignment:

AllPineV4_c24734___AFIILLVLSGSNFIAVQCLNKPFNVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYD
B8LLU8_______________AFLVLSVMLAVG--GVEC-----GVTYDHKALVINGERRILISGSIHYPRSTAEMWPDLFRKAKDGGLDVIQTYVFWNMHEPSPGNYNFEGRFD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
366	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain