SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34703

Length: 681 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene34703 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	46%
Blast2go	hypothetical protein VITISV_015895 [Vitis vinifera]	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
260		66		33	0.997452
275	33		66		0.997452
279	25		75		0.996473
296		75		25	0.996473
301		50		50	1.0
317		75	25		0.996473
330	75			25	0.996473
334	50			50	1.0
337		85	14		0.993533
338	85			14	0.993533
341		57	14	28	1.0
343	85		14		0.993533
344	14			85	0.993533
349	14		85		0.993533
350			14	85	0.993533
351	85	14			0.993533
355		85		14	0.993533
356	14	28		57	1.0
357		42	57		1.0
360	14			85	0.993533
361		14		85	0.993533
367			85	14	0.993533
392	88		11		0.923564
397	11			88	0.923564
399	88		11		0.923564
405	88		11		0.923564
407	88			11	0.923564
411	88		11		0.923564
413		66		22	0.999999
427		87	12		0.992554
432		87		12	0.992554
433	25		75		1.0
459	12		87		0.992554
463		12	87		0.992554
475		85		14	0.993533
478		85	14		0.993533
480	14		85		0.993533
486		85		14	0.993533
495	83			16	0.994514
496	20	20	60		0.99255
506			66	16	0.988813
507	16		66		0.988813
510	20			60	0.99255
531		33		66	0.997452
534		25		75	0.996473
535	25		75		0.996473
536	50		50		1.0
537		25		75	0.996473
538	25			75	0.996473
540		25	50	25	0.99554
555		33		66	0.997452
556		33		66	0.997452
557		33	66		0.997452
580	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain