SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34669

Length: 293 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene34669
ATGGGATGGGAAAGATATGCCCATCTCCCAATTCATAGAGTGGGATGTTAATGTGAAAAATCCACAATTGGATTTCTGCAGTATGAAGGAGCTGCAGCAGTAGATGGTCGGAAGCCGAGCATCTTTGACACTTTCACTCACAGGGAAGGGACTATTCCGGATGGAAGTAATGGAGATGTAGCTGTTGATCAATACCATCGTTACAAGGAGGATATTGAATTAATGTCTGCGATGGGAGTAGATGCCTATAGACTTTCAATCTCATGGCCCAGGCTTATTCCTGATGGTGAAGG

Ace file of the UniGene sp_v2.0_unigene34669

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative prunasin hydrolase precursor [Prunus serotina]	-	-	2.0e-21	67%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	0.0	65%
Blast2go	bgl33_orysj ame: full=probable inactive beta-glucosidase 33 short=os9bglu33 flags: precursor	-	-	4.5217e-27	80%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 398 aas, your sequence is shorter than subject: 97 - 513

Fln protein: MGWERYAHLPIHRVGC*CEKSTIGFLQYEGAAAVDGRKPSIFDTFTHREGTIPDGSNGDVAVDQYHRYKEDIELMSAMGVDAYRLSISWPRLIPDGE

Protein Length: 98

Fln nts: ATGGGATGGGAAAGATATGCCCATCTCCCAATTCATAGAGTGGGATGTTAATGTGAAAAATCCACAATTGGATTTCTGCAGTATGAAGGAGCTGCAGCAGTAGATGGTCGGAAGCCGAGCATCTTTGACACTTTCACTCACAGGGAAGGGACTATTCCGGATGGAAGTAATGGAGATGTAGCTGTTGATCAATACCATCGTTACAAGGAGGATATTGAATTAATGTCTGCGATGGGAGTAGATGCCTATAGACTTTCAATCTCATGGCCCAGGCTTATTCCTGATGGTGAAGG

Fln Alignment:

AllPineV4_c24577___QYEGAAAVDGRKPSIFDTFTHREGTIPDGSNGDVAVDQYHRYKEDIELMSAMGVDAYRLSISWPRLIPDG
Q9ZT64_______________QYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain