SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34390

Length: 1513 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene34390

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9H2N0_POPTR	-	-	1.0e-19	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	ap2 erf domain-containing transcription factor	-	-	1.60224e-21	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	1.60224e-21	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRQ5

Fln msg: your sequence is shorter than subject: 313 - 350

Fln protein: VVTLAVTQAWECRDKILENLWARFIAGSSEGNSVGFSYAISDGEASGPSDSSCPSFSMAPLVASSPQGDEVTVIRSNLNGNTCTQSQPEPLATSSKLNWSEQRRTGLMEKPPRKNYRGVRRRPWGKFAAEIRDSSRRGARLWLGTFNTAEDAAMAYDKAALKMRGSATYLNFPLEIVSNALVQELDSVRCILPQAELPNSEAISPIPLTCYLGRSSHQSSTSSADVSVCGIIRKKPSGSGFPQEEEQPPPKRSNTTQIWNPEVDYDCLPAMDDYFSVPDVVEVQDLGVDYLEELLRSTDADTEEFYDFHLPP*

Protein Length: 314

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTGGGAATGTAGAGATAAAATTTTGGAGAACTTATGGGCCAGGTTCATAGCAGGAAGCTCTGAAGGGAACTCTGTGGGGTTTTCATACGCCATTTCGGATGGTGAGGCCTCTGGCCCCAGCGACTCCTCCTGTCCTAGTTTCAGTATGGCACCACTTGTGGCTTCAAGCCCTCAAGGTGATGAGGTGACAGTTATAAGGTCTAATCTGAATGGCAATACATGCACGCAGTCACAGCCAGAACCCCTGGCCACCTCTTCCAAACTTAACTGGTCAGAACAAAGACGCACTGGTCTTATGGAAAAACCACCGAGAAAGAATTACAGAGGTGTTCGGAGGCGCCCTTGGGGAAAATTTGCAGCTGAAATAAGGGATTCAAGCCGGCGAGGAGCTAGGTTATGGTTGGGGACATTCAATACCGCAGAAGATGCAGCCATGGCGTATGATAAAGCTGCTTTGAAAATGAGGGGATCTGCTACTTATCTGAACTTTCCTCTTGAAATCGTGTCGAATGCCTTGGTTCAGGAGCTTGATTCGGTTCGCTGCATCCTCCCGCAAGCTGAATTACCCAACTCAGAAGCTATATCTCCTATTCCACTCACGTGTTATCTAGGGAGATCGTCTCACCAGTCCAGTACTTCATCCGCTGATGTATCAGTGTGTGGTATAATCAGAAAAAAGCCCAGTGGATCGGGATTTCCTCAAGAAGAAGAGCAGCCACCTCCCAAACGGTCAAATACCACACAAATTTGGAACCCCGAGGTCGATTATGATTGTTTGCCGGCGATGGATGATTATTTTTCAGTTCCAGACGTAGTGGAGGTGCAGGACCTTGGCGTAGATTACTTGGAAGAATTGCTTCGCTCTACCGACGCCGACACAGAAGAATTCTACGATTTTCATCTCCCCCCTTGA___GTCCTTTGTAGCACATCATGGTTTTTCTTGATCACCTGTGAGCGTAAATGGGACTCATTCTCCAAGGTGCACGATTCTTCTGAAGATCTTTCATTTTGAAACTAGAGCCCTAATCAGTTCTTTTCGTCTCCTTCCTTTCTGGTTATTGTGAGTTTATAATATTCTTATGGATTCGTAATTTGTTTGGGCTGCACACACTGATACCATTATTAAAGCCAGGGGGAGATATGGAACCTCTTTAGACTTTTTCTACTCCTTAATCTACTATGTTGACCTCTCAGATATCATTTATATGTTATGATTCTCGCTTATCAAAATATATCCTTTTTAAAACCAAAATTAGACGAGATTTTGTTGAAATACCAATGTGTTCTCGCAGATATAAGTATAAGCCGTATACCTGGATCCCCACATTAGGCAAGTAGAGCTTATAGATCTGTATCCGTGAATGCTCACATAATAGTTTACATCCATGATTTTACCAGGCTTCGCTTGGGTGGGACGCAATCATTTTTACACTGCAAAACTGTGAACTTTTAAATGTATTAGTATGCAGCATTGATTGGATGATGA

Fln Alignment:

AllPineV4_c23826___QRRTGLMEKPPR---------KNYRGVRRRPWGKFAAEIRDSSRRGARLWLGTFNTXXXXXXXXXXXXXXXRGSATYLNFPLEI
A9NRQ5_______________RQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFPLEV

SNPs (tot: 120)

Position	A %	C %	G %	T %	Probability
222	75		25		0.99649
405	83	16			0.994516
406			16	83	0.994516
409	83		16		0.994516
410	83			16	0.994516
421	20		80		0.995493
422	80			20	0.995493
423		20	80		0.995493
424	20		80		0.995493
425	80	20			0.995493
426			80	20	0.995493
427		80		20	0.995493
428	20			80	0.995493
470		75		25	0.996473
488		16		83	0.994516
490		66		33	1.0
491	16	16		66	0.988847
492			16	83	0.994517
493		16		83	0.994517
494	50		50		1.0
496	66	33			1.0
497	66	33			1.0
498	66			33	1.0
499		14		85	0.993534
501	50		33	16	1.0
502		42	57		1.0
503			71	28	1.0
504			85	14	0.993534
505			71	28	1.0
506	66	33			1.0
507	33	16		50	1.0
512		14	71		0.984337
513	16	83			0.994512
514	16			83	0.994512
516		83	16		0.994512
518		16		83	0.994512
523		16	83		0.994512
587		83	16		0.994512
598		12		87	0.992556
600	87			12	0.992556
601	87	12			0.992556
602			12	87	0.992556
604	87		12		0.992556
605	12	75			0.975346
608	75			25	1.0
609	71			28	1.0
610		85	14		0.993533
611			28	71	1.0
613	85			14	0.993533
614	12		87		0.992555
616	75	12	12		0.975363
619		85		14	0.993533
620			14	85	0.993533
622		28		71	1.0
625		87	12		0.992554
626			12	87	0.992554
664		77	22		0.999999
668	77			22	0.999999
669			75	25	1.0
670			25	75	1.0
671		75	25		1.0
673	62			25	1.0
677	88			11	0.923564
680			11	88	0.923576
707		12		87	0.992554
710		11	88		0.92373
713	87		12		0.992554
714	11			88	0.923564
716	88	11			0.923564
717	87	12			0.992554
719		88		11	0.923564
720	88		11		0.923834
722	77	11			0.968134
723	88			11	0.924009
724	88		11		0.923695
725	88			11	0.92391
726	87	12			0.992554
730		88		11	0.924009
733	44		44		1.0
803	63		36		1.0
817		10		90	0.90298
820		44		55	1.0
821		10	90		0.90298
934		33	66		1.0
956		71		7	1.0
958		78		21	1.0
968	84	10		5	0.999846
969	5	29	64		1.0
989	29		70		1.0
995		70	29		1.0
1018			83	16	1.0
1028		88	11		0.999937
1082	87	12			0.999964
1115		25		75	1.0
1116			25	75	1.0
1144	25		75		1.0
1167		72		27	1.0
1172	72	27			1.0
1185		72	27		1.0
1225		50	50		1.0
1237			30	70	1.0
1250	20		80		0.999996
1251	80		20		0.999996
1272		12		87	0.992554
1280	88	11			0.923628
1281			12	87	0.992554
1290		50		50	1.0
1297		40		60	1.0
1312	60		20		0.992552
1313			75	25	0.996473
1327		50	50		1.0
1338	50		50		1.0
1343		75	25		0.996473
1358	75		25		0.996473
1380	20	80			0.995494
1381	80	20			0.995493
1429	50		50		1.0
1462	33	66			0.997476
1463			66	33	0.997476
1464		66		33	0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain