SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34226

Length: 574 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene34226
CGTCGTGACCTTGGCTGTCACTCATTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTAACTACAGCCACTGAGACAATTCAACATATTCTTGACGAGGCTGTTAAAAGTCCAAATCTCCAGTATTCTCACTTCATTTCCTTGCCACTGGCTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTTGAAGGTACAAAAATTGCAGTTGGCCTGAGTGTTGAAGATAATACTGAGCATGTCAAAGTAGAAATGTTGGAAATCCCTGTTAATAATGAAATCTCCAAGATTCCGGGATCAATTTCTGGAATTAAGAGTACTCATGCACATCCAGCAGATGATAATTCTAATGAAAAAGAGGCTGTTGCAGTCAATCTCAATGTAGATGGTGATAATGTTCGTGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATC

Ace file of the UniGene sp_v2.0_unigene34226

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQI1_RICCO	-	-	8.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	eukaryotic protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Predicted eukaryotic LigT	IPR009210	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD13

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 23 aas, your sequence is shorter than subject: 190 - 292

Fln protein: S*PWLSLICFVSTPKKTTTVVVDGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLDLSGSAGKEESDSDSDSNAESSDDDFEGTKIAVGLSVEDNTEHVKVEMLEIPVNNEISKIPGSISGIKSTHAHPADDNSNEKEAVAVNLNVDGDNVRVKLDVKSIIQDVNAK

Protein Length: 191

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTAACTACAGCCACTGAGACAATTCAACATATTCTTGACGAGGCTGTTAAAAGTCCAAATCTCCAGTATTCTCACTTCATTTCCTTGCCACTGGCTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTTGAAGGTACAAAAATTGCAGTTGGCCTGAGTGTTGAAGATAATACTGAGCATGTCAAAGTAGAAATGTTGGAAATCCCTGTTAATAATGAAATCTCCAAGATTCCGGGATCAATTTCTGGAATTAAGAGTACTCATGCACATCCAGCAGATGATAATTCTAATGAAAAAGAGGCTGTTGCAGTCAATCTCAATGTAGATGGTGATAATGTTCGTGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATC

Fln Alignment:

AllPineV4_c23367___DGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLDLSGSAGKXXXXXXXXXXXXXXXXXFEGTKIAVGLSVEDNTEHVKVEMLEIPVNNEXXXXXXXXXXXXXTHAHPADDNSNEKEAVAVNLNVDGDNVRVKLDVKSIIQDVNAK
D5AD13_______________DGPSAKSVTTAAETIQQILEEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLSLSGTAGKEESDSDSASNAESSEDDFEGKKITVDLNVEDNTEHVKVAMLEIPVNNEISKTPGSISGIENTHAHPADENSNKKEAVAVNLNVDRDNVRVKLDVKSIIQDVNAK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
396	66			33	0.997455
397	66		33		0.997455
399		33		66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain