SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33945

Length: 1125 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33945 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	3.0e-26	38%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	44%
Blast2go	hypothetical protein VITISV_040269 [Vitis vinifera]	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Viral nucleic acid binding	IPR008891	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
812		33		66	0.997452
819	66		33		0.997452
832	33		66		0.997452
839	33	66			0.997452
842		33		66	0.997452
846		33		66	0.997452
854	66		33		0.997452
868		33		66	0.997452
887		80		20	0.995493
889			20	80	0.995493
890		60		40	1.0
891		80		20	0.995493
904			20	80	0.995493
905	20			80	0.995493
906			80	20	0.995493
914	20		80		0.995493
917	20		80		0.995493
919			80	20	0.995493
922	80			20	0.995493
926		80		20	0.995493
938		40		60	1.0
957	60		40		1.0
958			80	20	0.995493
959		50		50	1.0
960			20	80	0.995493
969			80	20	0.995493
974	20	80			0.995493
975	80		20		0.995493
981		25		75	0.996473
985		50		50	1.0
993		75		25	0.996473
995	25	75			0.996473
996	50		50		1.0
1002	75		25		0.996473
1006			75	25	0.996473
1011	75	25			0.996473
1026		25		75	0.996473
1036		75	25		0.996473
1037			75	25	0.996473
1040		66	33		0.997455
1045		75		25	0.996473
1050	25		75		0.996473
1059	25		75		0.996473
1082		75		25	0.996473
1087			75	25	0.996473
1104	33			66	0.997452
1105		33	66		0.997452
1108		33	33	33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain