SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33889

Length: 361 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene33889
GAATCGGAAATGGGAAGAAATTTCGATGGACTTTATTGTATTACCCGTATTTGAAGGCAAGGATTAGATTTTTGTAGTGGTCAACGGACTCACCAAATATGCTCACTTTATGGCAATAAAGAAATCATACTCAGCGAAACAAATCGCTGAAATATTTTGCAAAAATATATATAAATTACATGGTTTTCCGAAAGTCATTGTGAGTGATAGAGATGCCAAATTCAAGGGTAATTTCTGGAAGGATTTGTTCAACCACATAGGAACCTACCTAAATATGATTCCGCTTATCACCCTCAAACAGATGGACAAATAGAGGTTGTCCATAAATGTTTGGAGGCCTACCTACGTTGCTACGCTACAG

Ace file of the UniGene sp_v2.0_unigene33889

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	9.0e-11	22%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	pol protein integrase region	-	-	1.60599e-28	67%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C9A7

Fln msg: Overlapping hits, possible frame ERROR between 277 and 271, Distance to subject end: 856 aas, your sequence is shorter than subject: 120 - 1852

Fln protein: NRKWEEISMDFIVLPVFEGKD*IFVVVNGLTKYAHFMAIKKSYSAKQIAEIFCKNIYKLHGFPKVIVSDRDAKFKGNFWKDLFNHIGTYxxxxSAYHPQTDGQIEVVHKCLEAYLRCYAT

Protein Length: 121

Fln nts: GAATCGGAAATGGGAAGAAATTTCGATGGACTTTATTGTATTACCCGTATTTGAAGGCAAGGATTAGATTTTTGTAGTGGTCAACGGACTCACCAAATATGCTCACTTTATGGCAATAAAGAAATCATACTCAGCGAAACAAATCGCTGAAATATTTTGCAAAAATATATATAAATTACATGGTTTTCCGAAAGTCATTGTGAGTGATAGAGATGCCAAATTCAAGGGTAATTTCTGGAAGGATTTGTTCAACCACATAGGAACCTACxxxxxxxxxxxxTCCGCTTATCACCCTCAAACAGATGGACAAATAGAGGTTGTCCATAAATGTTTGGAGGCCTACCTACGTTGCTACGCTACAG

Fln Alignment:

AllPineV4_c22303___RKWEEISMDFIV-LPVFEGKD*IFVVVNGLTKYAHFMAIKKSYSAKQIAEIFCKNIYKLHGFPKVIVSDRDAKFKGNFWKDLFNHIGTYLxxDSAYHPQTDGQIEVVHKCLEAYLRCY
A5C9A7_______________RVWDDISLDFIDGLPSSQGKDSIMVVVDRLSKYAHFIALSHPFSAKMIAEKFVENIIKLHGMPKSIISDRDPIFVSKFWQEFFTMSGTQLxxSSAYHPQTDGQTEVVNRCLEQYLRCF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
77	25		75		0.996481
79	33		66		0.997452
82		50	25	25	0.995595
83	66			33	0.997452
86	50		50		1.0
106	33	66			0.997452
124	75		25		0.996483
126	33	66			0.997452
128			33	66	0.997452
136	33		33	33	0.997753
140		75		25	0.996476
175	66		33		0.997452
179		66		33	0.997452
180	66		33		0.997452
181		50		50	1.0
185			25	75	0.99649
188		66		33	0.997452
189		66		33	0.997452
190	25		75		0.996474
191	66		33		0.997452
201		25		75	0.996486
219	75		25		0.996486
220	75		25		0.996474
222	33			66	0.997452
235		66		33	0.997454
241	25		50		0.995533
244	25		25	50	0.995533
270			25	75	0.996473
276		25		75	0.996476
284	50		50		1.0
312		33		66	0.997453
320		33	66		0.997453
323		66	33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain