SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33848

Length: 901 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33848 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonol synthase n=2 Tax=Ginkgo biloba RepID=D0UZK7_GINBI	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	flavonol synthase	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMU9

Fln msg: Separated hits, possible frame ERROR between 158 and 230, and possible frame ERROR between 754 and 775, Distance to subject end: 70 aas, your sequence is shorter than subject: 271 - 345

Fln protein: MAVRVQAIAEGGLESIPPEFVRxxxxxxxxxxxxxxxxxxxxxxxxxEIPVIDLSNLHHSGHLREKTLTEIAGASREWGIFQIVNHGISEELIQRLQSVGEEFFRLPQEEKEAYANNPAAGNLEGYGTKLAAILDGKLEWLDYYFHMLWPPSRRDFNTWPKHPPAYIEVNDEYGRKLLEVVNKLLAALSISLGMEESAMKEALGGENLEMEMKINYYPPCPxxxxxxxxPNEVPGLQVFNDGHWVSATNIPNAIIVHIGDQLEILSNGRYK

Protein Length: 272

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCAATTACAATTCTACACGTATAGTGAGAAGGAGCCCCGGAAGGGAGAGAGCAAAAGCCGAG_-_ATGGCGGTCCGAGTGCAAGCCATCGCAGAGGGAGGATTAGAGAGTATCCCTCCTGAATTTGTCAGGCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAAATCCCAGTTATAGATTTATCCAATCTACACCATTCCGGCCATCTCCGCGAGAAAACGCTGACAGAAATTGCAGGTGCGTCGAGGGAATGGGGTATTTTTCAGATTGTCAATCACGGAATTTCGGAAGAGTTGATACAACGCCTGCAGAGCGTTGGGGAAGAGTTCTTCCGTCTTCCACAAGAGGAAAAGGAGGCATACGCCAACAACCCTGCAGCTGGTAATCTGGAAGGCTACGGCACCAAGTTAGCTGCTATCCTTGACGGCAAGCTCGAGTGGTTAGATTACTATTTCCACATGCTCTGGCCTCCTTCTCGCAGGGATTTCAACACCTGGCCCAAACACCCACCCGCTTACATAGAAGTGAATGATGAATATGGTCGAAAGCTGTTGGAGGTGGTGAATAAACTATTGGCTGCGCTTTCGATCAGCCTAGGAATGGAAGAATCCGCCATGAAAGAAGCACTGGGTGGAGAAAATCTGGAAATGGAGATGAAAATCAATTACTATCCACCTTGCCCACxxxxxxxxxxxxxxxxxxxxxTACCAAACGAAGTGCCAGGACTTCAAGTGTTCAATGATGGTCATTGGGTTTCTGCCACTAACATTCCAAACGCTATCATCGTCCATATCGGTGACCAGCTGGAGATATTGAGCAATGGGAGATACAAGA

Fln Alignment:

AllPineV4_c22151___RVQAIAEGGLESIPPEFVRPxxxxxxxxxxxxxxxxxxxxxxxxEIPVIDLSNLHHSGHLREKTLTEIAGASREWGIFQIVNHGISEELIQRLQSVGEEFFRLPQEEKEAYANNPAAGN--LEGYGTKLAAILDGKLEWLDYYFHMLWPPSRRDFNTWPKHPPAYIEVNDEYGRKLLEVVNKLLAALSISLGMEESAMKEALGGENLEMEMKINYYPPCPRxxxxxxxPNEVPGLQVFNDGHWVSATNIPNAIIVHIGDQLEILSNGRYK
A9NMU9_______________RVQAVSLSGLQSIPSQFVRPxxxxxxxxxxxxxxxxxxxxxxxxEIPVIDLSSLEVD-ELREKTLTEIGRASQEWGIFQVVNHGISEALGERLQAAGREFFDLPQEEKEAYANLEGVTDDRFEGYGTKLKCTSDGRQGWSDFYFHTLWPPSLTDFNRWPKHPSFYREVTEEYGRRVLRVVDKLLAAFSIDLGLEKSTVKDALGGENLEMELKINFYPPCPQxxxxxxxPNDVPGLQIFKNNEWVTAKYVPNTLIIHIGDQLQTLSNGRYK

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
149	33		33	33	0.997747
150		66		33	0.997452
153	33			66	0.997452
160		33	66		0.997452
285	66		33		0.997452
318	80		20		0.995493
319		20		80	0.995493
320	20		80		0.995503
321	20			80	0.995493
325	25	75			0.996473
326			75	25	0.996473
344		20	80		0.995498
388	87			12	0.992554
408	11	88			0.92357
409			11	88	0.923572
414	11	88			0.923572
415	22		77		0.999999
416		11		88	0.923565
422	55			44	1.0
423		11		88	0.923564
426	22		77		0.999999
427	11	88			0.923564
428	88	11			0.923564
433	87		12		0.992555
461	87			12	0.992554
464		87	12		0.992554
471		12	75	12	0.975355
472		12	87		0.992556
473	12			87	0.992555
474	12			87	0.992554
476			12	87	0.992554
478		12	87		0.992554
479	12		87		0.992554
484		14		85	0.993534
589		87		12	0.99256
590		87	12		0.99256
594			14	85	0.993533
595	14	85			0.993533
597	14	85			0.993533
598			14	85	0.993533
600		14	85		0.993533
602	12	87			0.992556
604		87	12		0.992556
605	87			12	0.992556
609			12	87	0.992556
610	12		87		0.992556
612	87		12		0.992556
692			83	16	0.994512
693		83	16		0.994512
694	16			83	0.994512
697		83		16	0.994512
698		83	16		0.994512
706	16			83	0.994512
707	14			85	0.993536
708	85		14		0.993536
711		16	83		0.994516
712	16			83	0.994516
713		16		83	0.994516
714	83		16		0.994516
736		75	25		0.996473
737		75		25	0.996473
741			80	20	0.995505
743			20	80	0.995505
745	80	20			0.995505
746		80		20	0.995505
747			80	20	0.995505
748	80			20	0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain