SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33759

Length: 484 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene33759
GCAACTTGCTAGTCATCTTGGACCGTTGGATGCTGATGCAGAAATGCCAGATGCAATGGAGATTTTGTTCCAGACAGCATTAGCATTCGGAAAGAAAGGAGCTATGGTGGAACTATTTGGAGCGATGGATAATGCAGCAGCATTATATTTGAAATCCACGACTTTACTGTCATTTATTTTGGTTGAAGCTTCATCCCTAGAACTGAATCCACCTTTTTCTCCAAGCATTTCTGATCGGCAACGGCTTCGTCGATACATTGATTGCTTAACTCACCAAAATCAGTCTATAGCACGCAGCAGGGTCTTTTTATAGCATGAAGACTAGCAAAGTCTGTAAATATAGTGTGATGCAAAAATTAATTCAGTTCATCAATTGATAAAAATTACTCAGAATTTTCACAAATTTGATTACCATAACCAATACTTTGTAATTAGCTGTGGTTTGAAGTTTGGATCAAATTGTAAATTTGGACTAGGACTTCAG

Ace file of the UniGene sp_v2.0_unigene33759

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	serine threonine-protein kinase atg1-like	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8H6

Fln msg: your sequence is shorter than subject: 104 - 448

Fln protein: QLASHLGPLDADAEMPDAMEILFQTALAFGKKGAMVELFGAMDNAAALYLKSTTLLSFILVEASSLELNPPFSPSISDRQRLRRYIDCLTHQNQSIARSRVFL*

Protein Length: 105

Fln nts: GCAACTTGCTAGTCATCTTGGACCGTTGGATGCTGATGCAGAAATGCCAGATGCAATGGAGATTTTGTTCCAGACAGCATTAGCATTCGGAAAGAAAGGAGCTATGGTGGAACTATTTGGAGCGATGGATAATGCAGCAGCATTATATTTGAAATCCACGACTTTACTGTCATTTATTTTGGTTGAAGCTTCATCCCTAGAACTGAATCCACCTTTTTCTCCAAGCATTTCTGATCGGCAACGGCTTCGTCGATACATTGATTGCTTAACTCACCAAAATCAGTCTATAGCACGCAGCAGGGTCTTTTTATAG___CATGAAGACTAGCAAAGTCTGTAAATATAGTGTGATGCAAAAATTAATTCAGTTCATCAATTGATAAAAATTACTCAGAATTTTCACAAATTTGATTACCATAACCAATACTTTGTAATTAGCTGTGGTTTGAAGTTTGGATCAAATTGTAAATTTGGACTAGGACTTCAG

Fln Alignment:

AllPineV4_c21852___QLASHLGPLDADAEMPDAMEILFQTALAFGKKGAMVELFGAMDNAAALYLKSTTLLSFILVEASSLELNPPFSPSISDRQRLRRYIDCLTHQNQSIARSRVFL*HED*QSL
D5A8H6_______________QLAHHLGPLDGNAEMPDAMEIVFQTALTFGKKGAMDELFGEVDNAAALYLKSTTILSFILVEASSLELNPPFSLSISDRQRLHRYIDCLTHQNQSIAHSRVFVQREDQQSL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
111	75		25		0.996479
159		75		25	0.996473
242	80		20		0.995493
243		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain