SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33675

Length: 1281 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33675 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	78%
FL-Next	sp=Probable phospholipid hydroperoxide glutathione peroxidase; crystallinum).	-	-	78%
Blast2go	glutathione peroxidase-like protein	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LEF0

Fln msg:

Fln protein: MTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVASQCGLTTSNYTELNELYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSTGEISGDDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEVPG*

Protein Length: 165

Fln nts: ATGGGGAGGAGCCACTCGTGCTTATCCCTATTCACACACTAAATCCCTATTTTCTTGGACCCCATCACTCATATGCGCGTCCCCGTGTTCCCCCGGCCCTGCGTTACTCATATCCAGAACACATCTATATAAACCCCATAAACCCTCTGTAGCCCTCGTGCCCTTCACTTTGTTGTTTCTTATAGTACTAAATCACTCTCAGGCTCTCCTTTTGGATCAAACTAAGAGTACTTGATCTTTTCTGTCTTGCTTTCTCTGCTAACTTTGCAGCT_-_ATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGACCTCACAGTCAAGGACATTAGGGGTAATGACGTGGATCTCAGCATCTATAGAGGCAAGGTTTTGATCATCGTCAATGTTGCCTCTCAATGTGGGTTGACTACCTCTAACTATACTGAGCTAAATGAACTGTATGCAAAGTACAAGGATCAAGGATTAGAAATACTGGCTTTCCCATGCAATCAGTTTGGTGGACAGGAACCTGGTGATAATGAACAAATTGTAGAAGTAGCCTGCACTCGTTTTAAAGCAGAGTTTCCCATATTTGACAAGGTGGAAGTTAATGGTAGTAGTGCAGCTCCTGTGTACAAGTTCTTGAAGTCGAGCACAGGGGAGATTTCTGGAGACGACATAAAGTGGAACTTCACTAAATTTTTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCTCCAACTACGTCTCCATTGAGTATTGAGGTGCCTGGATAA___ATCCTCCTCCTGATGCAGATTTGCAGATTCAATCGCTCTCTAATTGGTTGCTTCGCATAAGAACATTAGCATTTAGAGGGTTTTGATTAAAAAGTTTAGGATATTAAAGGAACTCATAGTATAATATAGCAAGAGTTACTAATATTTTCCATTTGATGTATGCAGAAAGATGTAAAGAAGTTGTTAGAAATTGCAAAGATGTGAAGGAGTTGTTAGGAATTGCTTGATTCTGTTAAGAAACAGCATATAATGGCATTTAGGTTGGTGAAAGAGAAGCAGCAGCAATTCAACGAGAGAGTATTACATTTGCAGCACAAGATTCAAGGGAGCATTGTGAGGCCGTTTATCAAATACTTATTTTATTGGAGTTGCACAAGATTAAAGGAACATTGTTAGGCCGTTTATCTGTTGGTTAAAGTCTACACTGTATTATTTTTTATCCGTGCTTTAATTTATATCATGACAATACTTATACGGGTTTCAATGTAATTTAATTATCTGCACCATGTTGATATCC

Fln Alignment:

AllPineV4_c21531___MTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVASQCGLTTSNYTELNELYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSTGEISGDDIKWNFTKFLVDKDGNVVERYAPTTSPLSIE
Q9LEF0_______________MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
287	66	33			0.997452
300		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain