SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33650

Length: 665 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33650

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Protein of unknown function DUF1068	IPR010471	-	-
Sma3	Down-regulated-in-metastasis protein	IPR011430	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
195		12		87	0.992554
213	62		37		1.0
303		60		40	1.0
312		40		60	1.0
333		80		20	0.995493
426	40		60		1.0
434	60		40		1.0
535			33	66	0.997452
536			33	66	0.997452
552	50		50		1.0
553			80	20	0.995493
554	80			20	0.995493
581	75		25		0.996473
594	25			75	0.996473
595		75	25		0.996473
600			75	25	0.996474
610	33	66			0.997452
611		33	66		0.997452
612	33		66		0.997452
613			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain