SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33647

Length: 1223 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33647

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana] ref\|NP_001189641.1\| Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana] gb\|AAO42872.1\| At2g30500 [Arabidopsis thaliana] dbj\|BAE99505.1\| hypothetical protein [Arabidopsis	-	-	2.0e-25	37%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	41%
Blast2go	kinase interacting family protein	-	-	3.75396e-35	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	SET domain	IPR001214	-	0.0	-
Sma3	KIP1-like	IPR011684	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9S3W8

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 268 - 313

Fln protein: MEVEPQPSYSWWLNSHNKPKKSVWLQTTLADLDNKTKAMLSLIQEEADSFAKRADMYYTKRPELINLIEQFYRAHRSLAERYDHLKGETKQNAHKAVKFQDALSCDGFLGSPFAKDLANENGIEGLQEVISVHDSSASDSEISEVDNPKPQVYKIKNEESYDQHSESVNALTSSDSELDNPEPQVYKIKNEENSDLDNESESALTSSDSEVDNPVHEAAETGNLNSKLREMEGRISYLEEENTRLLRRLTMKNLKSKHLKEKIRRLKK

Protein Length: 269

Fln nts: ATGGGGTGCGTAGGGTTAGGCTTCCCAATGGGAAGGCGGTTCATTCATCCGCTCTGCGAACGTCTCTATCCTCGGATAGAGTTGTGAAATCAGTATTTACAGCAGTGAAAAATAGGACCTTGGGATCTTTTGCCATGGCGGCGAAGGGCTCGGAAATTGCTCAAGGTCCGGTGGGGTTGAAAGTTTTCTGTATAAGGACGGGAGGCTCCAAGGATTGTATCGTTGAAGTTTGGACGACGCAGGATCAGAGTCATTTGCAGGATCTTTCCGTCATTACAGGTTCTCGTCACAGCAGTCTTCGTGAGGCTTCTTTGAAGGTTTGAAGAACAATTTTAAGGTGGAAATTTTCCATCCATCTCTTTCTTGACCAGTTTTGAAGATCAATTATAAGGTGATTAAAGTTTTCCCTCGATAAAG_-_ATGGAGGTAGAGCCACAACCGTCTTATTCTTGGTGGTTGAATAGCCACAACAAACCCAAGAAATCTGTATGGCTTCAAACTACTCTAGCAGATCTAGATAATAAGACTAAAGCTATGTTGAGTCTCATACAAGAAGAAGCAGATTCATTTGCGAAGCGAGCAGATATGTACTACACTAAGAGGCCGGAGCTTATTAATTTGATTGAACAGTTTTACAGAGCACACCGTTCGTTGGCAGAGCGGTATGATCATTTGAAAGGGGAAACCAAACAGAATGCTCATAAAGCGGTCAAGTTTCAGGATGCCTTGTCTTGTGATGGTTTCCTAGGATCACCTTTTGCAAAGGATCTTGCTAATGAGAATGGCATTGAAGGATTGCAAGAGGTGATCAGTGTGCATGACAGTTCTGCATCTGATTCAGAAATATCTGAAGTTGACAATCCGAAGCCACAGGTTTACAAAATTAAGAATGAGGAGAGTTATGATCAGCACAGTGAAAGCGTGAATGCATTGACCAGTTCCGATTCTGAACTTGACAACCCTGAGCCACAAGTTTACAAAATTAAGAATGAGGAGAATTCTGATCTCGACAATGAAAGCGAGAGTGCATTAACCAGCTCTGATTCTGAAGTGGACAACCCTGTACATGAGGCTGCAGAAACTGGAAACCTCAACAGCAAATTGAGGGAAATGGAAGGCAGGATCTCATATCTAGAAGAAGAGAACACAAGGCTGCTGAGGCGATTAACAATGAAAAACCTTAAATCTAAACATCTCAAGGAAAAAATTAGAAGATTGAAGAAGGA

Fln Alignment:

AllPineV4_c21412___EPQPSYSWWLNSHNKPKKSVWLQTTLADLDNKTKAMLSLIQEEADSFAKRADMYYTKRPELINLIEQFYRAHRSLAERYDHLKGETKQNAHKAV--KFQDALSCDGFLGSPFAKDLANENGIEGLQEVISVHDSSASDSEISEVDNPKPQVYKIKNEESYDQHSESVNALTSSDSELDNPE
B9S3W8_______________EMETSHWWWFDSHHSSLRSPWLQSTLAELDNKTKAMLKVIEEDADSFAQRAEMYYKKRPELISMVEDFYRTHRSLAERYDQLKSDSGNRLLTTLGSPFSAKYQSQKFMGGMDRADDSHSETYELQKSVGGMNRAYDSHSETYE-----HQKFVCGMNQTYDSHSDIYDLEDSAESEVDDPE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
201			75	25	0.996473
227	75		25		0.996473
358	66	33			0.997452
407	33			66	0.997467
565			75	25	0.996473
566	75		25		0.996473
567			25	75	0.996473
568			25	75	0.996473
599		75		25	0.996473
659		66		33	0.997452
676		33		66	0.997453
692	83			16	0.994514
693	83			16	0.994513
703		83	16		0.994512
704	83		16		0.994512
711		20	80		0.995493
757	83		16		0.994512
766	83		16		0.994512
868		14	85		0.993533
1034	33			66	0.997464
1035		33		66	0.997464
1037	66			33	0.997464
1038		66		33	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain