SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33576

Length: 1090 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33576 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein yptv3, putative n=1 Tax=Ricinus communis RepID=B9T5U9_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	uncharacterized gtp-binding protein at5g64813-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	81%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	81%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	81%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	81%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	81%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	81%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	81%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	81%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	81%
Blast2go	GTPase activity	GO:0003924	Molecular Function	81%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Mitochondrial Rho-like	IPR013684	-	-
Sma3		IPR013753	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
760			14	85	0.993533
763	14		85		0.993533
764	14			85	0.993533
765		85	14		0.993533
986		60	40		1.0
987	40	60			1.0
988		60	40		1.0
996	60	40			1.0
998	40		60		1.0
1001	60			40	1.0
1002	60	40			1.0
1009	60		40		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
647	664	CTCTAT CTCTAT CTCTAT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain