SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33518

Length: 650 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33518 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=U-box domain-containing protein 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Blast2go	u-box domain-containing protein 15-like	-	-	3.79008e-27	68%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
289			66	33	0.997452
470	66			16	0.988813
471	14			85	0.993533
495	85			14	0.993533
497	14	85			0.993533
500		85	14		0.993533
502		14		85	0.993533
503	14			85	0.993533
504		85	14		0.993533
505	85	14			0.993533
506		14		85	0.993533
510		85	14		0.993533
513	14		85		0.993533
516	14	85			0.993533
517		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
467	479	CAAT CAAT CAAT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain