SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33490

Length: 868 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33490 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] sp\|Q94K98.2\|Y1720_ARATH RecName: Full=UPF0392 protein At1g27200 gb\|AAF79871.1\|AC000348_24 T7N9.26 [Arabidopsis thaliana] gb\|AAN12989.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30793.1\| uncharacterized pr	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Domain of unknown function DUF23	IPR008166	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLQ9

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 289 - 595

Fln protein: FRRYYEIPPSHHSSKSSSKDNAQKMKVLCACTMVFNVAKYIREWVIYHSHLGVEHFFLYDNNSEDNLAETVEGLLSENYKVSRHPWPWAKTQESGFSHCALMAKYKCQWMMYTDVDEFVFSPLWLKQLKANPNIGYPLKNTASKAALRQLVMNLSKPGAALTGQISLRCRNFGPSGLREHPQRGVTQGYTCMERNLKRYKSILLLEAASPSLLNIIHRFQLKKGYRTVYVKAQRTVINHYKYQAWSEFKAKFRRRVSAYVVDWKESKNVVSQDRAPGLGNRAIKPHGWE

Protein Length: 290

Fln nts: TTCCGTCGCTATTATGAAATCCCACCATCTCATCATTCAAGCAAAAGTAGTAGTAAAGATAATGCACAGAAAATGAAAGTACTCTGTGCCTGCACCATGGTGTTCAACGTTGCAAAATACATAAGAGAATGGGTTATCTACCATTCTCATCTGGGTGTGGAACACTTCTTTCTGTACGATAACAACAGTGAAGACAATCTGGCAGAAACTGTTGAAGGGTTACTGTCAGAAAATTACAAGGTAAGCAGGCATCCATGGCCATGGGCTAAGACACAGGAATCTGGATTCTCACACTGTGCTCTCATGGCCAAATACAAGTGTCAATGGATGATGTACACTGACGTTGACGAGTTTGTATTTTCTCCATTGTGGCTAAAGCAACTCAAGGCCAATCCCAATATTGGGTACCCATTAAAGAATACTGCATCAAAAGCAGCTCTAAGGCAATTAGTCATGAATCTTAGTAAACCGGGGGCTGCATTGACAGGGCAAATTTCTTTGAGATGCAGAAATTTTGGACCCTCGGGCCTCCGGGAGCACCCGCAGAGAGGGGTTACTCAAGGGTACACTTGCATGGAAAGGAATCTGAAGCGCTACAAATCCATACTTCTTCTGGAAGCTGCCTCTCCTTCGTTGCTCAATATAATACACCGCTTTCAGTTGAAGAAGGGATACAGAACAGTGTATGTGAAGGCCCAGAGGACAGTGATCAATCACTACAAGTACCAGGCTTGGAGTGAATTCAAGGCTAAGTTTCGGAGGAGGGTGTCTGCATATGTTGTGGATTGGAAAGAATCTAAGAATGTTGTGTCCCAAGATCGAGCTCCAGGCCTTGGCAACAGGGCCATCAAACCCCATGGATGGGAGA

Fln Alignment:

AllPineV4_c20811___LCACTMVFNVAKYIREWVIYHSHLGVEHFFLYDNNSEDNLAETVEGLLSENYKVSRHPWPWAKTQESGFSHCALMAKYKCQWMMYTDVDEFVFSPLWLKQLKANPN--IGYPLKNTASKAALRQLVMNLSKPGAALTGQISLRCRNFGPSGLREHPQRGVTQGYTCMERNLKRYKSILLLEAASPSLLNIIHRFQLKKGYRTVYVKAQRTVINHYKYQAWSEFKAKFRRRVSAYVVDWKESKNVVSQDRAPGLGNRAIKPHGWE
B8LLQ9_______________LCACTMVFNGAKFLKEWIVYHSHLGVEQFFIYDNNSDDNLEEIIKSMADSSYNVKRHPWPWAKTQEAGFAHCALQARDSCHWVMFTDIDEFVFSPRWLNQWPNSTSNALGLLLINETTQ----MINSTSSLSGSPIIGQVSINCRNFGPSNLKSHPPQGVTQGYTCRQKLEQRHKSIVFLDALSPSLRNAIHHFELKPGYKTMRLTSSEAVINHYKYQAWSEFKAKFRRRVSAYVADWKDSKNLSSRDRVPGLGNEAIEPPGWE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
621		20	80		0.995493
623	22	77			0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain