SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33398

Length: 934 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33398

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chitinase A [Cycas revoluta]	-	-	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	53%
Blast2go	protein	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Chitinase II	IPR011583	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9IMH8

Fln msg: your sequence is shorter than subject: 288 - 380

Fln protein: KTLISIGGGGSNSTAFALMASNAFRRKVFINSAIALARKNGFHGLDLDWEFPKDATEMQNLGTLFAEWRHAIELEARAWPRRPRLLLTAAVYFAQYFLLAADKRAYPATSITQNLDWVNVMCFDYHGSWDTSATGAHAALYDPSSNISTSFGIGSWLHSGVPPNKVAMGMPLYGRSWILKSLDDTEIGAPAVAAGPKQTLSNEKGVMFFSEIRELINQKNATEVFNKETVSAYSYSSDMLWVGYDNQESVATKVSFAKEMHLLGYFFWAIGQDNNWMLSAQASDSWN*

Protein Length: 289

Fln nts: TCAAGACACTCATTTCTATCGGCGGCGGGGGATCCAATTCTACTGCCTTTGCTTTAATGGCCAGCAATGCTTTCCGGCGCAAGGTGTTCATAAATTCAGCTATCGCGCTGGCCAGGAAAAACGGTTTTCACGGGCTCGACCTCGACTGGGAATTTCCCAAAGACGCGACGGAGATGCAGAACTTGGGCACCCTCTTCGCTGAATGGAGGCATGCCATTGAACTGGAAGCCAGGGCATGGCCGCGTCGTCCCCGGCTCCTCCTCACCGCAGCTGTGTATTTTGCGCAGTATTTCCTCCTAGCCGCCGACAAGAGGGCGTACCCTGCGACCTCCATTACCCAAAATTTGGATTGGGTGAACGTCATGTGCTTCGACTATCACGGCTCCTGGGACACTTCAGCCACCGGAGCTCATGCGGCACTGTATGACCCATCCTCCAACATCAGCACCAGCTTCGGAATTGGATCGTGGCTCCACTCTGGGGTTCCTCCCAACAAAGTTGCCATGGGAATGCCACTCTACGGGCGTTCCTGGATACTGAAAAGCCTAGACGACACAGAGATTGGAGCCCCCGCCGTGGCTGCCGGTCCCAAGCAAACCCTGAGCAACGAAAAGGGTGTAATGTTCTTCTCGGAGATCAGAGAGTTGATAAATCAGAAGAACGCAACAGAGGTCTTCAACAAGGAAACGGTGTCGGCCTATTCATACTCATCAGACATGCTGTGGGTTGGTTACGACAACCAAGAATCCGTGGCAACGAAGGTTTCGTTCGCCAAAGAGATGCACCTGTTGGGTTATTTCTTCTGGGCCATCGGTCAAGATAACAACTGGATGCTTTCTGCCCAAGCTTCGGATTCATGGAATTAA___GTACGATGAGCCAGCGAGATACTAGCGAGACGATGCTATTTCTGTGGCGTTGTGAAGTTTGCAGAAGA

Fln Alignment:

AllPineV4_c20440___KTLISIGGGGSNSTAFALMASNAFRRKVFINSAIALARKNGFHGLDLDWEFPKDATEMQNLGTLFAEWRHAIXXXXXXXXXXXXXXXXXXVYFAQYFLLAADKRAYPATSITQNLDWVNVMCFDYHGSWDTSATGAHAALYDPSSNISTSFGIGSWLHSGVPPNKVAMGMPLYGRSWILKSLDDTEIGAPAVAAGPKQTLSNEKGVMFFSEIRELINQKNATEVFNKETVSAYSYSSDMLWVGYDNQESVATKVSFAKEMHLLGYFFWAIGQDNNWMLSAQASDSW
B9IMH8_______________KTLVSIGGGSSDPKLFARMASNKGSRSIFIDSAMEVARRHGFDGLDLDWEFPKDPKEMVDLGQLFKEWRVAIRKEAKSTHRSPLLLTAA-VYFAVDFQWDETYRKFPVASIAKSLDWVNAMCYEYRGSWDTSATGAHAALYDPHGNISTSYGLTSWVRAGVPGNMVVMGLPLYGRTWLLKDPKVNGIGAPATAAGP-----GDDGVLIFSQVEKFNKENGATVVYDAKTVSTYSYAGTS-WIGYDDSRSTTVKLKFAQALGLRGYFFWALSYDSEWEISKQASRAW

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
455		33	66		0.999972
494		66		33	0.907696
652		28		71	1.0
662		71	28		1.0
686	85		14		0.993533
689	85		14		0.993533
716	28			71	1.0
720		71		28	1.0
750	80	20			0.995493
760	25		75		0.996473
769	25		75		0.996473
770	25		75		0.996473
793		75	25		0.996473
873	66		33		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain