SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33367

Length: 1484 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33367 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	85%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	thioredoxin reductase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	87%
Blast2go	Selenocompound metabolism	00450		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	87%
Blast2go	cell growth	GO:0016049	Biological Process	87%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	87%
Blast2go	thioredoxin biosynthetic process	GO:0042964	Biological Process	87%
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU83

Fln msg:

Fln protein: MGTTGEAELERMRTATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGCCGAGTGATTGATCGAAAAGAAGAAGAAACATATCTCTGTTGTCGTCGACAAATTCGTTCAGGAAGAGA_-_ATGGGAACGACGGGGGAGGCAGAGTTGGAAAGGATGAGAACGGCCACATGTATAGTAGGGAGCGGACCGGCGGCGCACACGGCTGCCATATACACCGCGCGGGCGGAGCTGAAGCCCATTCTCTTCGAAGGATGGATGGCCAACGGAATCGCCCCCGGCGGCCAACTCACGACTACTACTGACGTAGAAAACTTCCCAGGGTTCCCACAGGGGATAATGGGGATGGACTTGACAGAGAAATTCAAGGAGCAGAGTCTCCGTTTCGGGACGCGGGTTTTCACGGAGACAGTTGTGCGCCTCGATTTGTCTGTGAGGCCATTCAGGCTTTACACGGACACAAAGCAGGTGGACGCCGATACTGTTATCATTGCCACAGGGGCGGTGGCAAAGCGCCTGGATTTTCCGGGTGCCGGCGAGGGAGAAGACGGGTTCTGGAACAAGGGCATCTCCGCCTGCGCCGTTTGCGATGGCGCCGCTCCCATTTTCCGCAACCGACCGCTGGCGGTGATCGGGGGCGGAGACTCTGCCATGGAGGAGGCGAACTTTTTGACTAAGTACGGTAGCAAAGTTTACATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGAGGTCCTCAAAGCTTTTGGGAACGAGAGAGGCTTGCTCAGTGGACTCAATCTGCGGAACATAGTGAAAAATGAGGAGTCGTCGTTGGAAGTGTCAGGGCTGTTCTTCGCCATCGGGCATGAGCCGGCCACAAAGTTTCTGGAGGGGCAGTTGGAGTTGGACTCAGACGGTTACATTGTGACAAATCCTGGAACCACTCAGACGAGTATATCGGGGGTTTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGCCAAGCCATCACCGCTGCTGGCACAGGATGCATGGCAGCACTAGAAGCCGAGCACTTTTTACAGGAGGTAGGGGTACAAGAGGGCAAGTATAGTTCATCGCTTTAG___GTGGACACGGGTGATATTTACAGTTCCAAACAGAAGTCTTCTTTTTCCGTACTCTCCATAGAACACTCTTCTATTCAGCTTAGTTGTGGGTCTGAATTTTACTATTAACGCTATATGCTATATAACAGCATCAAATGACCTTTCCCATTTTTCCCCATGGAGGTATTTATTCACTTTGTACTATGTTATTTTTATGAGTTATGAAAAGAGTCCGGATTACCTTTTCCATTGAAGAGATGAGTCCGGATTACCTTTTCCATTGGAGAGATGTTTATATTATTTTAAGTAGTGTGTCTTGAATTTTTCGATATGTTTACTTAATTAATTATAAATGGCTAAACTTTGTTATTATACACGGCTTCGC

Fln Alignment:

AllPineV4_c20298___MGTTGEAELERMRTATCIVGSGPXXXXXXXXXXXAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTEVLKAFGNERGLLSGLNLRNIVKNEESSLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL
A9NU83_______________MGTTGEVELERMRVATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSLRFGTRVFTETVVRMDLSVRPFRLYTDTKQVDADTVIIATGAVAKRLDFPGGGEGEDGFWNKGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNAEVLKASGNERGLLSGLDLRNTVTGEASVLEVFGLFFAIGHEPATKFLEGQLELDTDGYIVTKPGTTQTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEIGAQEGKYSSLL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1290	10		90		0.90298
1292		90		10	0.90298
1293			10	90	0.90298
1294	10			90	0.90298
1299		10		90	0.90298
1300	10	90			0.90298
1301	10	90			0.90298
1302	10		90		0.90298
1303		90	10		0.90298
1304		90		10	0.90298
1306	10		90		0.90298
1447			66	33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain