SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33354

Length: 571 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene33354
GTTAAATGTGGAGAATGTCAGTCTGGACTCGTCGTGACCTTGGCTGTCACTCAATTTTAGCTTGGCAGACCCATGGCTCTACGTCACCTTGGCTCTGACTTAGGCTGGTCTTTACGCTGCGGTTCATGGCCAGTACTTATATGATACCGCGTTTAACATTGATTGTGGCGGATATAAGAATTTCACAAATCAGTTCAATCAGTCATGGATATCAGATAGATTCTATACTGGAGGTGCACCGGGACTTGTTTCAGAACCTCACATTTTTGAACAGGAACAAGAGAAAACGTTGCGGTTCTTCCCTATTGCAATGGGGAAAAAGAATTGCTATACAGTCAATGTGCCTGAAGGCCGATATTATATAAGGACATTTTTTGTGTATGACAATTATGATAGTAGGAGACACACACCAAGCTTTGATGTTTCAGTTGAGGGGACACTTGTCTTCAGCTGGAGATCACCTTGGTTAGAGACAAATGCCAGGAAAGGGGCCTACTCAGATCTATTTGTTTTGTAAGAGATGGTGAAGCTACAGTGTGCCTTTATAGCATTGCCACAGATGCACCTGTTA

Ace file of the UniGene sp_v2.0_unigene33354 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] gb\|AEE30643.1\| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana]	-	-	2.94273e-44	60%
FL-Next	Isoform 2 of Uncharacterized protein At1g24485 OS=Arabidopsis thaliana GN=RWK1	-	-	0.0	34%
Blast2go	leucine-rich repeat receptor-like serine threonine-protein kinase at2g14440-like	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: A5PHT0-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 310 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 138 - 478

Fln protein: AGLYAAVHGQYLYDTAFNIDCGGYKNFTNQFNQSWISDRFYTGGAPGLVSEPHIFEQEQEKTLRFFPIAMGKKNCYTVNVPEGRYYIRTFFVYDNYDSRRHTPSFDVSVEGTLVFSWRSPWLETNARKGAYSDLFVL*

Protein Length: 139

Fln nts: GTTAAATGTGGAGAATGTCAGTCTGGACTCGTCGTGACCTTGGCTGTCACTCAATTTTAGCTTGGCAGACCCATGGCTCTACGTCACCTTGGCTCTGACTTAGGCTGGTCTTTACGCTGCGGTTCATGGCCAGTACTTATATGATACCGCGTTTAACATTGATTGTGGCGGATATAAGAATTTCACAAATCAGTTCAATCAGTCATGGATATCAGATAGATTCTATACTGGAGGTGCACCGGGACTTGTTTCAGAACCTCACATTTTTGAACAGGAACAAGAGAAAACGTTGCGGTTCTTCCCTATTGCAATGGGGAAAAAGAATTGCTATACAGTCAATGTGCCTGAAGGCCGATATTATATAAGGACATTTTTTGTGTATGACAATTATGATAGTAGGAGACACACACCAAGCTTTGATGTTTCAGTTGAGGGGACACTTGTCTTCAGCTGGAGATCACCTTGGTTAGAGACAAATGCCAGGAAAGGGGCCTACTCAGATCTATTTGTTTTGTAAGAGATGGTGAAGCTACAGTGTGCCTTTATAGCATTGCCACAGATGCACCTGTTA

Fln Alignment:

AllPineV4_c20246___NIDCGGYKNFTNQFNQSWISDRFYTGGAPGLVSEPHIFEQ--EQEKTLRFFPIAMGKKNCYTVNVPE---GRYYIRTFFVYDNYDSRRHTPSFDVSVEGTLVFSWRSPWLET
A5PHT0-2_____________SIDCGSSSSHIDADNRTWVGDTDFV--ATGLTSKFVPFSKFPAELTTLRYFPT--GETNCYT-NIPVEKGGKVLVRTRFLYGDYDEESTYPTFDVVYDGKHRYSVVTTTFET

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
228	25		75		0.996473
229	25		75		0.996473
230		75		25	0.996473
232	75		25		0.996473
233		75		25	0.996473
410		85		14	0.993533
428	42		57		1.0
454	60		40		1.0
477	60		40		1.0
481		60	40		1.0
483		40	60		1.0
493		40	60		1.0
497	40			60	1.0
498	60	40			1.0
528	66	33			0.997454
529		33	66		0.997458
531	33		66		0.997454
533	33	66			0.997454
534	66			33	0.997452
535			66	33	0.997452
536		66		33	0.997452
538	66	33			0.997454
540			66	33	0.997458
545	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain