SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33288

Length: 911 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33288 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	late embryogenesis abundant protein-like protein [Arabidopsis thaliana] dbj\|BAB10109.1\| root cap protein 2-like protein [Arabidopsis thaliana] gb\|AAZ23915.1\| At5g54370 [Arabidopsis thaliana] gb\|AED96489.1\| late embryogenesis abundant protein-like protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	structural constituent of cell	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Root cap	IPR009646	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSR1

Fln msg: your sequence is shorter than subject: 284 - 319

Fln protein: FSHIACFVDCGANCRTSCRWRKPNCDEDGAICYEPRFIGGDGIMFYFHGNSNEDFCMISDRNLQINAHFIGRRPEGRTRDYTWVQSLGIMFGTHTFIVGATKVSKWDDHVDHLYFAFDGQAFTVTPEYLSLWKEPSSGLKVERTADTNSVIVSIPQMVELFVRAVPVTAEDNRVHNYQIPPNNAFSHLELQFKFFNFTYEVDGVLGQTYRPNFKNPVKVGVPMPIMGGENKYRTSSLLAADCRYCIFSPHSPSIANAFTVKDTGLDCTSKFGKAHGTGLACRR*

Protein Length: 285

Fln nts: CTTCTCACACATCGCATGCTTTGTCGACTGTGGTGCAAATTGCAGGACATCCTGCCGATGGAGGAAGCCAAATTGCGATGAAGATGGAGCCATTTGCTACGAGCCTCGCTTCATAGGAGGGGACGGTATCATGTTCTACTTCCATGGCAACAGCAACGAGGATTTCTGTATGATTTCCGACAGAAATCTGCAAATCAACGCTCATTTTATTGGCAGGAGACCTGAAGGGAGAACCAGGGATTACACGTGGGTTCAATCCCTGGGAATCATGTTCGGTACTCATACCTTCATAGTGGGTGCAACCAAAGTGTCCAAATGGGATGACCATGTCGATCACCTCTACTTCGCCTTCGACGGCCAGGCCTTCACCGTGACACCGGAATACCTCTCGCTGTGGAAAGAACCATCGTCTGGTCTGAAAGTCGAACGCACAGCCGACACTAACAGCGTCATCGTTTCGATCCCTCAAATGGTGGAGTTGTTCGTCAGAGCTGTGCCTGTTACGGCGGAAGACAATCGTGTTCACAACTATCAGATTCCTCCGAATAACGCCTTCTCTCATCTCGAACTCCAATTCAAATTCTTCAATTTCACCTATGAGGTTGACGGCGTTCTGGGACAGACTTACAGGCCTAATTTTAAGAATCCTGTCAAGGTTGGAGTTCCTATGCCTATCATGGGTGGAGAGAATAAGTACCGAACCTCCTCACTTCTTGCAGCCGACTGCCGTTACTGCATTTTCTCGCCCCATTCTCCTTCCATTGCCAACGCCTTCACTGTGAAAGATACCGGCCTGGATTGCACCAGCAAGTTCGGGAAAGCCCATGGGACTGGTCTCGCATGCCGTAGATAA___ATGCATTTGACCGCAGTGACCGCAGTACGCCTATTTTGAATCGAGGGCTCATCATAAA

Fln Alignment:

AllPineV4_c19967___CFVDCGANCRTSCRWRKP--NCDEDGAICYEPRFIGGDGIMFYFHGNSNEDFCMISDRNLQINAHFIGR-RPEGRTRDYTWVQSLGIMFGTHTFIVGATKVSKWDDHVDHLYFAFDGQAFTVTPEYLSLWKEPSS-GLKVERTADTNSVIVSIPQMVELFVRAVPVTAEDNRVHNYQIPPNNAFSHLELQFKFFNFTYEVDGVLGQTYRPNFKNPVKVGVPMPIMGGENKYRTSSLLAADCRYCIFSPHSPSIANAFTVKDTGLDCTSKFGKAHGTGLACRR
A9NSR1_______________CPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLHINGHFIGKSKKQGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLLLDDQPIVLPPGRGADWESASAPGLKISRLQDANSVTVEVAESFVITARVVPITAEESRIHKYEITEDDCFAHLELNFKFFALSPQVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASDLFAADCKVARFAGRAIESVAGHNFPEVA--CGS--GSAAGRGIVCRK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
467	25	75			0.99649
584		25	75		0.996473
674	87		12		0.992554
879			75	25	0.996486

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain