SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33242

Length: 698 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33242

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endonuclease III [Arabidopsis thaliana] gb\|AAD26474.2\| putative endonuclease [Arabidopsis thaliana] gb\|AEC08549.1\| endonuclease III [Arabidopsis thaliana]	-	-	1.0e-36	73%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	75%
Blast2go	endonuclease iii	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	base-excision repair	GO:0006284	Biological Process	82%
Blast2go	DNA N-glycosylase activity	GO:0019104	Molecular Function	82%
Blast2go	chloroplast nucleoid	GO:0042644	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
187			16	83	0.994512
190		85		14	0.993538
191		85	14		0.993538
193		14		85	0.993537
195	85			14	0.993537
196	83			16	0.994512
197			16	83	0.994512
198		83	16		0.994512
200	83			16	0.994512
201		83	16		0.994512
204	16			83	0.994512
207		16	83		0.994512
208	16		83		0.994512
209		16		83	0.994512
412	16		83		0.994512
513		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain