SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33172

Length: 802 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33172 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide deformylase [Arabidopsis thaliana]	-	-	9.80909e-45	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	peptide deformylase	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptide deformylase.	EC:3.5.1.88	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptide deformylase activity	GO:0042586	Molecular Function	0.0	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Formylmethionine deformylase	IPR000181	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
297	50		50		1.0
435		25		75	0.996475
458	25	75			0.996473
462		75		25	0.996473
556		20		80	0.995494
633	20	80			0.995494

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain