SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33135

Length: 1200 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33135 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] dbj\|BAB08751.1\| calcium-binding transporter-like protein [Arabidopsis thaliana] gb\|AED96027.1\| Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mitochondrial substrate carrier family protein	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3		IPR001993	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX45

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 250 - 511

Fln protein: MSGAGQAVDLAPFSKMESMPKTQRDNRRAECCNPVRNTGEVSLEHVMLALRETKEERELRIRSLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLQVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGIDRHTHASNYLIAGGVAGALSRTATAPLD

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCATTTTTTCGTCAGTCAAATTGCGGAAGTAGATCTCACGCGTGGACTTGAAGGAGGGAATATATGTTCCCCAGTCTGTCTGTTTGTCTATTGCTCTGAAGAAAGAAAGCAGACAAGCAATTCTGTGAGTTAATTCAGCTGAGAAGAGATTCAGAAAATATTTGCCTTCCAGTGAAATAAAGATACAGGGTCCAATTTTCATGGTTGTGAATTAGTGATATAAGGTTTGATCGGCCCTACGATTTAAATTTCCGAGCGAATATGAGTTCTCTTGGTTGTGTGCGGTGACTGGAGTATGTAGGGTTTGATCGGCCCTACGATTTCAATTTCCGAACAAGTCTAAAGCATTTCTTGTTGCAAGTCGTCGCAATTTCCGTAATTGCAAGCATCGAAGCTCGAAAATTC_-_ATGTCGGGCGCTGGCCAGGCCGTTGACCTTGCTCCCTTCTCCAAAATGGAATCTATGCCAAAGACACAGCGGGATAATCGTCGGGCCGAATGTTGCAATCCTGTGAGAAATACAGGCGAGGTGTCCTTAGAGCATGTTATGTTAGCTTTGAGGGAGACGAAAGAGGAGAGGGAATTGAGGATCCGGAGTCTGTTTAATTTCTTTGATGCAATGAACAGTGGGCACCTTGACAATTCGCAAATTGAGAGGGGTCTACAGGCATTGCGGATACCGGCCGAATACAAGTATGCCAAGGATCTGCTTCAAGTTTGCGATTCTAATCAGGATGGCCGTGTCGAGTACCAGGAGTTTCGGCGGTATATGGATGACAAGGAACTCGAGCTTTACCGCATTTTTCAGGCGATAGATGTGGAACACAATGGCTGCATTTTACCTGAAGAGCTATGGGAAGCACTCGTTAGAGCAGGCATTGAAATGAGTGATGAAGAACTTGCGCGTTTCGTGGAGCACATAGATAAGGATAATAATGGAATCATAACATTTGAAGAGTGGCGGGATTTTCTCCTTTTATATCCACATGAGGCAACCATAGAAAACATATATAGGTATTGGGAAAGGGTTTGCCCCATAGATATTGGGGAGCAAGCAGTTATTCCTGAAGGTATTGACAGGCACACACATGCATCCAATTATCTTATTGCTGGAGGGGTTGCTGGTGCTTTGTCTCGAACTGCTACAGCTCCTCTTGACCG

Fln Alignment:

AllPineV4_c19073___MSGAGQAVDLAPFSKMESMPKTQRDNRRAECCNPVRNTGEVSLEHVMLALRETKEERELRIRSLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLQVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGIDRHTHASNYLIAGGVAGALSRTATAPLD
A9NX45_______________MSGAGQAVDQIPFSKMESIPKTQQDNRRAECCNPVRNSGEASLEHVMLALRETKEERELRIRCLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLNVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVKAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGINRHTHASNYLIAGGVAGALSRTATAPLD

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
578		80		20	0.995493
669			33	66	0.997452
670	33	66			0.997452
674	33	66			0.997452
676	33	66			0.997455
680		33	66		0.997452
682	33			66	0.997452
683			33	66	0.997452
684	66		33		0.997452
826		60		40	1.0
830		40		60	1.0
846		25	75		0.996473
848	75	25			0.996473
849			80	20	0.995503
852		75		25	0.996473
853		75		25	0.996473
860	80	20			0.995493
863	20	80			0.995493
1102	66			33	0.997452
1103			33	66	0.997452
1105			33	66	0.997452
1107		66	33		0.997452
1108	33	66			0.997452
1110	33			66	0.997452
1111		66	33		0.997452
1119			25	75	0.996474
1120		75		25	0.996474
1162	66		33		0.997459
1178	33		66		0.997476
1182	66		33		0.997476
1183		66		33	0.997476
1187		66		33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain