SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33094

Length: 444 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33094

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 n=37 Tax=Magnoliophyta RepID=NDUS2_ARATH	-	-	2.00386e-43	97%
FL-Next	tr=NADH-ubiquinone oxidoreductase fe-s protein, putative; Ricinus communis (Castor bean).	-	-	0.0	93%
Blast2go	nadh dehydrogenase subunit 7	-	-	0.0	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase.	EC:1.6.99.3	-	0.0	97%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	97%
Blast2go	Metabolic pathways	01100		0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	97%
Blast2go	generation of precursor metabolites and energy	GO:0006091	Biological Process	97%
Blast2go	NADH dehydrogenase activity	GO:0003954	Molecular Function	97%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH-quinone oxidoreductase, subunit D	IPR001135	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
357	20		20	60	0.992551
358		66	16	16	0.988814
359	66		33		1.0
360	83		16		0.994512
408		75		25	0.996473
422		20		80	0.995499
423		20		80	0.995499
428		75		25	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain