SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33071

Length: 360 nt

UniGene Fasta

>sp_v2.0_unigene33071
AATGTCAATCAACACGTTGAGTCAACATATGGTTGAGCCTCACCACTCACATTGGATTGGTGCCAAGAATCTGTTGAGATATCTTCGTGGCACAATCACTCATGGGTTGAGATACATTGTCGGAGATGTGAGTCTACTTGGATATACCGATGTTGATTGGGCAGGTAGTGTGGTGGACCGAAAGAGCACTTCTGGGTGTTGTTTCTCTTTGGGATTTGCCTCGATATCCTGGATGAGCAGGAAGTAGAAGTTGGTGGCTTTGAGCACCGCCGAGGTAGAGTACATTGTTGCTAGTATGGCCTCTTGTGAGGCGGTCTGGTTGCAGAAGCTCTTCAGTGAGATGTTTGGATTCACATTGGA

Ace file of the UniGene sp_v2.0_unigene33071

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	5.0e-23	43%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%
Blast2go	disease resistance protein	-	-	2.70017e-27	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 119 - 542

Fln protein: MSINTLSQHMVEPHHSHWIGAKNLLRYLRGTITHGLRYIVGDVSLLGYTDVDWAGSVVDRKSTSGCCFSLGFASISWMSRK*KLVALSTAEVEYIVASMASCEAVWLQKLFSEMFGFTL

Protein Length: 120

Fln nts: AATGTCAATCAACACGTTGAGTCAACATATGGTTGAGCCTCACCACTCACATTGGATTGGTGCCAAGAATCTGTTGAGATATCTTCGTGGCACAATCACTCATGGGTTGAGATACATTGTCGGAGATGTGAGTCTACTTGGATATACCGATGTTGATTGGGCAGGTAGTGTGGTGGACCGAAAGAGCACTTCTGGGTGTTGTTTCTCTTTGGGATTTGCCTCGATATCCTGGATGAGCAGGAAGTAGAAGTTGGTGGCTTTGAGCACCGCCGAGGTAGAGTACATTGTTGCTAGTATGGCCTCTTGTGAGGCGGTCTGGTTGCAGAAGCTCTTCAGTGAGATGTTTGGATTCACATTGGA

Fln Alignment:

AllPineV4_c18763___SINTLSQHMVEPHHSHWIGAKNLLRYLRGTITHGLRY-----IVGDVSLLGYTDVDWAGSVVDRKSTSGCCFSLGFASISWMSRK*KLVALSTAEVEYIVASMASCEAVWLQKLFS
Q9M5J7_______________AVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain