SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33070

Length: 507 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene33070
CTGTTGAGGGTCTAAGTGAAAAGAACGAGAATTCCGCGCTGCTTCATTACCTTCAGGTTGAACAAGATGACTCCAAGATGAATGTTCAACTAGAGCTTTTTGTTCTCAGTGCCAAGCAAGCAGCCTTTGATCAGCTTAGATCTATCGAGCAACTTGGTTATATCGTTTGGCTGAGTACACGGAATGATTCTGGAATTCGAGGAGCACAATTCATTATCCAATCCACTGTCAAGGACCCTGCACAGCTTGATCTGAGAGTGGAGGCATTTCTTAAAATGTTTGAGAGTAAACTACATGCTATGTCAGATGATGATTTTAAGACAAACGTGGATGCTTTGATTGATGATAAGCTCGAGAAACACAAAAACTTGCAAGAACAATCAAGCTTTTATTGGAGTGAAATTGAGCTTGGAACTCTTAAGTTTGACAGGGTAGAAATGGAGGTTGCTGAATTGAGGAAATTGACGACATTAGACTTGATTTACTTCTTTGATAATCACATAAAAC

Ace file of the UniGene sp_v2.0_unigene33070

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	insulin degrading enzyme [Solanum lycopersicum]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	insulin degrading enzyme	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8T8

Fln msg: Distance to subject end: 105 aas, your sequence is shorter than subject: 143 - 216

Fln protein: MNVQLELFVLSAKQAAFDQLRSIEQLGYIVWLSTRNDSGIRGAQFIIQSTVKDPAQLDLRVEAFLKMFESKLHAMSDDDFKTNVDALIDDKLEKHKNLQEQSSFYWSEIELGTLKFDRVEMEVAELRKLTTLDLIYFFDNHIK

Protein Length: 144

Fln nts: CTGTTGAGGGTCTAAGTGAAAAGAACGAGAATTCCGCGCTGCTTCATTACCTTCAGGTTGAACAAGATGACTCCAAG_-_ATGAATGTTCAACTAGAGCTTTTTGTTCTCAGTGCCAAGCAAGCAGCCTTTGATCAGCTTAGATCTATCGAGCAACTTGGTTATATCGTTTGGCTGAGTACACGGAATGATTCTGGAATTCGAGGAGCACAATTCATTATCCAATCCACTGTCAAGGACCCTGCACAGCTTGATCTGAGAGTGGAGGCATTTCTTAAAATGTTTGAGAGTAAACTACATGCTATGTCAGATGATGATTTTAAGACAAACGTGGATGCTTTGATTGATGATAAGCTCGAGAAACACAAAAACTTGCAAGAACAATCAAGCTTTTATTGGAGTGAAATTGAGCTTGGAACTCTTAAGTTTGACAGGGTAGAAATGGAGGTTGCTGAATTGAGGAAATTGACGACATTAGACTTGATTTACTTCTTTGATAATCACATAAAAC

Fln Alignment:

AllPineV4_c18762___TRNDSGIRGAQFIIQSTVKDPAQLDLRVEAFLKMFESKLHAMSDDDFKTNVDALIDDKLEKHKNLQEQSSFYWSEIELGTLKFDRVEMEVAELRKLTTLDLIYFFDNHIK
D5A8T8_______________TRNDSGVKGAQFVIQSTVKDPAQLDLRVEAFLKMFESKLYAMSDDEFKANVDALIDVKLEKYKNLREQSRFYWREIEDGTLKFDRKKIEVDVLRKLTKQDLIFFFDNYIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain