SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32874

Length: 1215 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	allyl alcohol dehydrogenase [Nicotiana tabacum]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nadp-dependent alkenal double bond reductase p2	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNN2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 38 aas, your sequence is shorter than subject: 250 - 351

Fln protein: MGANEVVNQQIILKNYITGLPKESDLEFISSTLTINLEELKKSKAGGQEEVVVVVKNLYLSCDPYMRGRMRDYHKSYIPPFTPGSVIQGFGVAKVILSNHPDFREGDFVSGTIGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFEVCSPKKGEHVFVSAASGAVGQLVGQFAKLMGCYVVGSAGNKQKVDLLKHKLGFDDAFNYKEEHDLDVALKRFVILNVDGWMDLFSLSILLGQ*

Protein Length: 251

Fln nts: ATGGGGGTTGGACACGAAGGTATAGGTAACTTCTAGTTGTCGAGGTCAGGGTAATTGAACGGTGGATCGCACGCAAGGAGGAGAGACCACCTACCCAGCGAATTCAAATTCGAGTTCTTATTTGACAACATGCCTGTAAAGGAGCATAAATTCATATCACCCTACACCAAATGGCACCAATGATATAAAAGGATTCATCTGTTCCAGGCTTCATCTGTTCCAGGCTGCCTGCTCTTAGCTTGTCACTTAATTTCCTAAAATACTTTCGAAA_-_ATGGGCGCCAATGAAGTTGTGAACCAGCAAATAATATTGAAGAATTACATAACCGGGCTTCCAAAGGAGTCGGACTTGGAATTTATTTCCAGCACGCTGACAATCAACTTGGAGGAGCTGAAGAAATCTAAGGCAGGAGGACAAGAGGAGGTGGTGGTGGTGGTGAAAAATCTGTATTTGTCGTGCGATCCATACATGCGAGGGCGCATGAGAGACTACCACAAATCCTACATACCTCCATTCACCCCTGGATCGGTTATACAAGGATTTGGGGTGGCTAAAGTGATACTCTCAAATCACCCAGACTTCAGAGAGGGTGACTTCGTATCTGGTACTATAGGATGGGAAGAGTACAGCATAATACCAAAAGGGAGTAACTTAACAAAGATCAAATATACGGATGTACCACTTTCATATTTTGTGGGTGTTTTAGGAATGCCCGGGTTTACTGCTTATGCTGGATTCTTTGAGGTTTGCTCTCCTAAAAAGGGGGAGCATGTTTTTGTCTCTGCGGCTTCGGGAGCTGTTGGCCAGCTTGTTGGGCAGTTTGCAAAGTTGATGGGTTGCTATGTTGTAGGGAGTGCGGGTAATAAACAGAAGGTTGATCTGCTGAAACATAAACTGGGTTTTGATGATGCTTTCAACTATAAGGAGGAGCATGACTTGGATGTGGCTTTAAAAAGGTTTGTCATTCTCAATGTTGACGGCTGGATGGATTTATTCTCTCTCTCGATTTTGTTGGGTCAATGATATTGGTCTTACGGAACAAATTATCATAATGTGAAGCTTAGATTCAAGTGTGATTTTCAAGCCCTTTGGTCTTGTCTTGATCCATTATCCAGATGAAAACAATACTTTTTTTAGAATTTTTCTTTATGTCGACAAGACTTGGTTAATACCATGATGTTAACATAGATTTCCTTTAAAATAAACTTTTCGAATAC

Fln Alignment:

AllPineV4_c18178___MGANEVVNQQIILKNYITGLPKESDLEFISSTLTINLEELKKSKAGGQEEVVVVVKNLYLSCDPYMRGRMRDYHKSYIPPFTPGSVIQGFGVAKVILSNHPDFREGDFVSGTIGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFEVCSPKKGEHVFVSAASGAVGQLVGQFAKLMGCYVVGSAGNKQKVDLLKHKLGFDDAFNYKEEHDLDVALKRFVILNVDGWMD
B8LNN2_______________MGANELVNRQIILKNYITGLPKESDLEFISSTLTLNLEELKQSKAG--EDVVVVVKNLYLSCDPYMRGRMRDYHKSYIAPFTLGSVIQGFGVAKVILSNHPDFREGDLVSGITGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFDVCSPKKGEHVFVSAASGAVGQLVGQFAKSMGCYVVGSAGNKQKIDLLKHKLGFDDAFNYKEEHDLDVALKRYFPDGIDIYFD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1140		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
421	436	GGT GGT GGT GGT GGT G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain