SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32818

Length: 1847 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32818 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copine, putative n=1 Tax=Ricinus communis RepID=B9RAR5_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	e3 ubiquitin-protein ligase rglg2-like	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Copine	IPR010734	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP8

Fln msg:

Fln protein: MGGRHSKSIRPRRYSSSSYGPSPAWDSSSYGPSPAVPSETYAQPAQPATKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSVFDEDNLIPCFGFGDALTHDQSVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPIIEAAIRIVEQSGGQYHVLLIIADGQVTRSVDTDNGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADSFQTNSSRNRCVDSFAGSAPPEAKDTQDAQLCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY*

Protein Length: 428

Fln nts: CAATCTTGAGCAGGGTTCTGTGCTTCTGTTTTGAGCGGATTTGCCTTCTGTGATTTTTAAATATCGGAAATCCGAGGATTTGTTACAAACATCATCCTGAACGGACGAGGCCTCTTGCATCGAGTGTTAATGGGATTTGCATGTTATCTGTAAATGTGCTGAGTTGTACTTACAACCTGATCCAATTTCCTGGGATTCTGTTTATGTTTTCTGAGGCAAGTTTATCTTCAATTCATTAGAGTTTGTGGAGAATATTATGTGCCATACCTGCAAAACCTTGCAAAAACTCAAAATCTAGGCA_-_ATGGGAGGCAGACATTCAAAAAGTATTCGCCCAAGGCGTTATAGTTCTTCTTCATATGGCCCTTCACCAGCATGGGATTCTTCATCCTATGGTCCTTCACCAGCAGTTCCATCGGAAACTTATGCACAACCAGCACAACCGGCGACTAAACAGAAGTTGCAAAGGAGATACTCCCGAATCGCTGACAATTACAATTCACTTGATGAGGTGACTGCAGCTCTCGCACAAGCTGGCCTCGAATCTTCCAATTTGATTGTAGGGATTGACTTCACTAAGAGCAATGAGTGGACAGGTGCAAGGTCTTTTAATCGCCGAAGCTTGCACCACATTGGAGACACTCCAAACCCTTATGAACAAGCGATTTCGATAATTGGGAGGACCTTATCTGTATTTGACGAAGACAACTTGATCCCTTGTTTTGGTTTTGGGGATGCTTTGACACATGATCAAAGTGTGTTTAGTTTCTATCCAGATGATAGGTTATGCAATGGATTTGAAGAAGCGTTGAGACGCTACAGGGAGATAGTCCCACATCTTCGACTGGCTGGGCCAACATCTTTTGCCCCAATTATTGAAGCAGCAATCCGTATTGTGGAACAGAGTGGTGGGCAGTACCATGTTCTCTTGATAATTGCAGATGGACAGGTAACAAGAAGTGTTGACACTGACAATGGACAACTGAGTACACAAGAACAGAATACAGTCAATGCAATAGTGGAAGCCAGTGAATATCCACTATCAATTGTCTTAGTTGGAGTGGGAGATGGGCCTTGGGACATGATGCGGCAGTTTGATGATAATATTCCAGCTCGAGCATTTGACAACTTCCAGTTTGTGAACTTTACAGAGATTATGTCAAAGAATGTTGCTCAATCTAGGAAGGAGACTGAGTTTGCCCTTGCATCACTTATGGAAATACCATCTCAGTACAAGGCCACACTGGATCTTCAAATACTGGGTCGCCGCAGAGGCAAGATGCCTGATAGGTCTCCTCTTCCACCAGCACTTGGCAATGATAATTATGCTGCTAGGCAACAATATCAGCGTGCAGACAGTTTCCAAACAAATAGCTCCCGAAATCGTTGTGTTGATTCCTTTGCAGGATCTGCTCCTCCAGAAGCCAAGGATACACAGGATGCTCAACTGTGTCCAATCTGCCTGATGAATGCTAAAGATCTTGCTTTTGGATGCGGTCATCAGACCTGTTACGACTGCGGACAGAACATTGTTACATGCCCTATATGTCGCAGTGATATCACAACCAGGATAAAACTGTATTAA___AGTCAATGCAGATTTCGCAGAAAGATAAATATCTATTATGACTTGGCCATCTGAAATACGCCGAATCGGGGCTGGATTGGCATGGGTCCATGTTCTATTGTGTGGATTTGCACAGTAGCTACGAGAGAAAAGCTTATTATTATTTTTGGTGTATATATTTTCTGCATGCACCTTCCAGAGGTTTTGCTTGGATTCTAAACCACAATCACTAAATTTGTTCAGTTTGTAGATAATGCGTAATGCCCTTGTTGGACAGACCAAAACC

Fln Alignment:

AllPineV4_c18031___MGGRHXXXXXXXXXXXXXXXXXXXXXXXSYGPSPAVPSETYAQPAQPATKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSVFDEDNLIPCFGFGDALTHDQSVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPIIEAAIRIVEQSGGQYHVLLIIADGQVTRSVDTDNGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVAQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRSPLPPALGNDNYAARQQYQRADSFQTNSSRNRCVDSFAGSAPPEAKDTQDAQLCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY
A9NUP8_______________MGGRHSKSLRPRRYSPSSYTPSAAWDSSSYGPSSEVPPETYSQPA---AKQKLQRRYSRIADNYNSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDTPNPYEQAISIIGRTLSAFDEDNLIPCFGFGDASTHDQHVFSFYPDDRLCNGFEEALRRYREIVPHLRLAGPTSFAPMIEGAIRIVEQSGGQYHVLLIIADGQVTRSVDIENGQLSTQEQNTVNAIVEASEYPLSIVLVGVGDGPWDMMRQFDDNIPARAFDNFQFVNFTEIMSKNVPQSRKETEFALASLMEIPSQYKATLDLQILGRRRGKMPDRFPLPPPLGNDNYAARQQYQRADSFQTNTPRNHCGDSFAGSAPPEFKDTQDAQMCPICLMNAKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1658	33	66			0.997452
1662	66			33	0.997452
1663	66		33		0.997452
1668	33		66		0.997452
1669			66	33	0.997452
1671		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain