SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32755

Length: 554 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene32755
AATGTCTTCTTGCAATCCAGCGATCCATGCAAATCGTAACGCCTTTCAGTTCGATTCCTGGAGGCCTAACCCTGTTGCCCTCTATGGCCCCTGAAGCAGAGAGCAGCGGCAGCCATGGCAGATTTAGCGAGCTCCGTCACCAGCCAAGAAAGTCCTCACTCAGAAGATACGAACAATAACAGCCAAAACCAGGGTTTTAATGCCCGGGAGCAGGATCGGTTCCTCCCCATTGCGAACATAAGCCGAATTATGAAGAAGGCAGTTCCTGCCAACGCCAAGATCGCAAAGGACGCCAAGGACACCGTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATTACCAGCGAGGCGAGCGACAAGTGCCAGCGTGAAAAGCGGAAGACAATCAACGGAGACGACTTGTTATGGGCCATGGGTACTCTAGGGTTTGAGGACTACGTGGAGCCTCTCAAGCTTTACTTGCACAAATATAGAGAGGCGGAGGGTGACAGCAAAGGAGCTGCTACTAGCAGATCTAGGTAAAAAGTGGGAGATTCTACTAAGAAAGATTCGAG

Ace file of the UniGene sp_v2.0_unigene32755

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CCAAT-box binding factor HAP3 n=3 Tax=Selaginella moellendorffii RepID=D8RRZ5_SELML	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ccaat-box binding factor hap3	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABK1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 136 - 154

Fln protein: MADLASSVTSQESPHSEDTNNNSQNQGFNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREAEGDSKGAATSRSR*

Protein Length: 137

Fln nts: AATGTCTTCTTGCAATCCAGCGATCCATGCAAATCGTAACGCCTTTCAGTTCGATTCCTGGAGGCCTAACCCTGTTGCCCTCTATGGCCCCTGAAGCAGAGAGCAGCGGCAGCC_-_ATGGCAGATTTAGCGAGCTCCGTCACCAGCCAAGAAAGTCCTCACTCAGAAGATACGAACAATAACAGCCAAAACCAGGGTTTTAATGCCCGGGAGCAGGATCGGTTCCTCCCCATTGCGAACATAAGCCGAATTATGAAGAAGGCAGTTCCTGCCAACGCCAAGATCGCAAAGGACGCCAAGGACACCGTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATTACCAGCGAGGCGAGCGACAAGTGCCAGCGTGAAAAGCGGAAGACAATCAACGGAGACGACTTGTTATGGGCCATGGGTACTCTAGGGTTTGAGGACTACGTGGAGCCTCTCAAGCTTTACTTGCACAAATATAGAGAGGCGGAGGGTGACAGCAAAGGAGCTGCTACTAGCAGATCTAGGTAA___AAAGTGGGAGATTCTACTAAGAAAGATTCGAG

Fln Alignment:

AllPineV4_c17887___SSVTSQESPHSEDTNNNSQNQGFNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREAEGDSKGAATSRSR*KVGDSTKKD
D5ABK1_______________SSVTSQESPHSEDTNNNSHNQGSNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREMEGDSKGAAASKS--GMGDPTKKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain