SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32752

Length: 1715 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32752 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	laccase 90c	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: your sequence is shorter than subject: 506 - 570

Fln protein: VHYGDTVIVETYNKAEYNATVHWHGVEQLRTPWADGPAYVTQCPIPPGGHYTYKFNITRQEGTVWWHAHYSWLRATVHGAFVMYPKEGSSYPFTKPYAEIPIIIGEWWNDNPIAVIDEAIRTGGAPNISDAYTINGQPGDLFNCSTSGTFRLSVKSGQTYLLRIVNAALNSGHFFKIAGHKITVVAVDACYTKPYKTDILVISAGQTTDVLITANQPVGKYYMAARAYNNQAAGDFDNTTATAILEYIGAQNSTSPILPSLPAYNDTDTVTIFSRALRSLASQEHPVDVPQTIDKSLISTVGLGLLPCETGNTCEGPNGTRLSASMNNISFVDPTISLLQAYYFNISDVYMTDFPSKPPVRFNYTGDDIPRKFWIPHPATKVKVLEYNSTVQLVFQSTNIFVAENHPMHLHGYNFYLVGDGYGNYNPDTDQQKFNLVDPPLRNTVIAPVSGWVAIRFKASNPGMWFLHCHLDDHFTWGLNMVFLVKNGGTPSSTIEPPPAYLPAC*

Protein Length: 507

Fln nts: TGTACATtACGGGGACACTGTTATTGTTGAAACTTATAACAAGGCCGAGTACAATGCCACTGTTCACTGGCATGGAGTGGAGCAGTTGCGTACACCATGGGCTGATGGACCTGCGTATGTTACACAATGCCCCATTCCACCAGGTGGTCATTATACATACAAATTCAACATCACTCGACAAGAAGGAACCGTGTGGTGGCATGCTCATTACTCATGGCTGCGTGCCACTGTGCATGGAGCTTTCGTAATGTATCCTAAGGAGGGAAGCTCATATCCCTTTACTAAACCCTATGCCGAAATTCCTATTATAATAGGAGAATGGTGGAACGATAACCCCATCGCGGTTATAGACGAAGCCATTCGCACAGGTGGTGCGCCCAATATATCCGATGCCTACACCATAAATGGACAGCCAGGAGATCTGTTTAACTGCTCTACCTCGGGAACATTTCGGCTCTCTGTAAAAAGCGGACAAACATACCTTCTGCGTATCGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGACACAAAATTACGGTTGTAGCTGTGGATGCTTGCTACACCAAACCATACAAAACAGATATACTTGTCATCTCTGCCGGCCAGACTACAGATGTTCTTATAACGGCCAACCAGCCTGTGGGCAAATACTATATGGCCGCCCGAGCATATAACAATCAGGCAGCGGGCGATTTCGATAACACCACTGCTACTGCCATTCTAGAATATATTGGAGCTCAAAATTCTACGAGTCCAATTTTGCCTAGCCTTCCAGCCTACAACGACACTGATACAGTCACTATATTTAGCAGAGCACTGAGAAGCTTGGCTTCCCAAGAACACCCAGTGGATGTTCCGCAAACTATAGATAAAAGCCTCATCTCCACAGTTGGACTGGGGTTGCTTCCCTGTGAAACTGGAAACACCTGTGAAGGCCCCAACGGAACGCGGCTGAGTGCAAGTATGAACAACATATCGTTCGTAGATCCTACGATCTCGCTGCTTCAAGCTTATTATTTCAACATCAGTGATGTCTATATGACGGATTTTCCATCAAAACCTCCAGTTAGATTCAACTACACGGGGGACGATATACCGCGAAAATTTTGGATTCCTCATCCGGCAACAAAAGTGAAAGTGCTGGAATACAACTCCACAGTGCAGCTCGTCTTTCAGTCAACAAACATCTTCGTGGCAGAGAACCATCCAATGCATCTTCATGGTTATAACTTTTACTTGGTGGGAGATGGCTACGGGAACTATAACCCAGACACCGACCAGCAAAAGTTTAATCTGGTCGATCCTCCACTGCGCAACACAGTAATCGCTCCAGTCAGCGGGTGGGTTGCCATAAGATTCAAAGCAAGCAATCCAGGAATGTGGTTTTTGCACTGCCATTTGGACGACCATTTCACGTGGGGATTGAATATGGTGTTTCTAGTGAAGAACGGTGGCACTCCTTCCTCAACAATAGAGCCCCCACCTGCATACCTCCCCGCGTGCTAG___GGAATGAACAAAAGTGATCAGGCGAAAAGGCATCCTGTGGCTGTCATCAGTGCTTTCCACTAAGTAAGATTTTATAATATAGTATTATCAGTTATCTCGTGGTAATCAAATCAGGTGTGACATTCTAAATAAGCTGTCAATTATTGAGCAAAATTTACCGTTGTATCGATGCAAGCGCTCCGACGTGTTTTTCTTG

Fln Alignment:

AllPineV4_c17877___VHYGDTVIVETYNKAEYNATVHWHGVEQLRTPWADGPAYVTQCPIPPGGHYTYKFNITRQEGTVWWHAHYSWLRATVHGAFVMYPKEGSSYPFTKPYAEIPIIIGEWWNDNPIAVIDEAIRTGGAPNISDAYTINGQPGDLFNCSTSGTFRLSVKSGQTYLLRIVNAALNSGHFFKIAGHKITVVAVDACYTKPYKTDILVISAGQTTDVLITANQPVGKYYMAARAYNNQAAGDFDNTTATAILEYIGAQNSTSPILPSLPAYNDTDTVTIFSRALRSLASQEHPVDVPQTIDKSLISTVGLGLLPCETGNTCEGPNGTRLSASMNNISFVDPTISLLQAYYFNISDVYMTDFPSKPPVRFNYTGDDIPRKFWIPHPATKVKVLEYNSTVQLVFQSTNIFVAENHPMHLHGYNFYLVGDGYGNYNPDTDQQKFNLVDPPLRNTVIAPVSGWVAIRFKASNPGMWFLHCHLDDHFTWGLNMVFLVKNGGTPSSTIEPPPAYLPAC
C0PRA7_______________VHNGDTVIVKAYNRAQHNATLHWHGVKQLRTGWADGPAYITQCPIPPGGHYTQRFTITGQEGTLWWHSHISWLRATVHGAIVILPQRGSLYPFPKPRAEIPIIIGEWWNKDPITVINQAILTGGAPNLSDAFTINGQPGDLYPCSTSETFRLPVKRGETYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMHLHGYNFYVIGEGFGNYNPKTDPLKFNLVDPPERNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
892	16	83			0.994517
903	16		83		0.994512
907	83			16	0.994512
1018	20	80			0.995493
1019		20	80		0.995493
1052		75		25	0.996473
1248	83		16		0.994512
1354	20			80	0.995493
1355		20	80		0.995493
1356	20		80		0.995493
1357			80	20	0.995493
1358		80		20	0.995493
1459		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain