SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32741

Length: 710 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32741 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] gb\|EEE66513.1\| hypothetical protein OsJ_22984 [Oryza sativa Japonica Group]	-	-	7.0e-36	42%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	30%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
51	66			33	0.997464
54	33		66		0.997471
91	33			66	0.997476
141			66	33	0.997467
148		66		33	0.997471
271		75		25	0.996473
277	25		75		0.996473
306	33		16	50	1.0
338	20	20	20	40	0.994159
349		16		83	0.994512
365		40		60	1.0
370			33	66	0.997452
374	33		66		0.997452
387		66		33	0.997452
389	66			33	0.997452
390		33		66	0.997452
404		66	33		0.997452
406	33	66			0.997452
447	75			25	0.996476
448		75	25		0.996473
450	75		25		0.996476
451	75			25	0.996473
452		75	25		0.996473
457			25	75	0.996473
458	75	25			0.996473
463	75		25		0.996473
464	75		25		0.996473
469			25	75	0.996473
470	25	25	50		0.995533
471		66		33	0.997452
472	25	25	25	25	0.997387
474		66		33	0.997452
513	66			33	0.997476
514	33		66		0.997454
515		66		33	0.997452
519			66	33	0.997452
565	66		33		0.997476
568	66		33		0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain