SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32668

Length: 704 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32668 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	9.0e-22	26%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	40%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	3.15446e-27	50%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
202	33		66		0.999999
211	33		66		0.997452
233	33		66		0.997452
269		33		66	0.998869
281	33		66		0.997452
314		66	33		0.997476
320	66		33		0.997452
327	33		66		0.997452
464			33	33	0.997753
467			66	33	0.997452
547		66		33	0.997476
578		66		33	0.997452
581	50		50		1.0
586	33	66			0.997452
591			33	66	0.997452
592		33		66	0.997452
616			25	75	0.996479
620	75			25	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain