SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32550

Length: 957 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32550

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF247 domain containing protein	-	-	7.9874e-44	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
503		88		11	0.923564
514		88	11		0.923564
515		11	88		0.923564
531	16	83			0.994512
551			83	16	0.994512
554	16		83		0.994512
558			75	25	1.0
585			77	22	0.999999
594	88			11	0.991528
621		11		88	0.923564
625	77		22		0.999999
630		22		77	0.999999
703	11		88		0.923564
705		22		77	0.999999
712		88		11	0.923564
718			77	22	0.999999
719			77	22	0.999999
727		28		71	1.0
758	16	83			0.994512
775	83		16		0.994512
781	50	33			1.0
795		33		66	1.0
796			83	16	0.994512
809	16	83			0.994512
810	83		16		0.994512
827		75		25	0.996475
886	75		25		0.996473
913	50	50			1.0
942			66	33	0.997453

SSRs (tot: 1)

Start position	End position	Sequence	Length
128	140	GAG GAG GAG GAG G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain