SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32545

Length: 321 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene32545
TTATAGTTCGGAATGTTCTGGAAGACACAGCGGGTTTAAGTTGGGAGCCCATGGTCATGTGGCGGGCTGTACGGGAGACTACTAAGGGAAAATTTAAAGAAGAGACAAAATCGGTCAAAGCTATTGATTGCCTGGATTGGTGTGAGGTAGATGAATTGGTAGTTTGACCAAAAAAATGCAAATATCAACATTATGCAAACTTGGCGTAGAGGCTTCATAAGACTTCCATCAAGATAACGTTGTGGGATATCTGATATCAAATATTGCTACTTGACGGCCACAAAGATCTTCCTTGTCCTCGTTGAAATCAACATTCATCAA

Ace file of the UniGene sp_v2.0_unigene32545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RSE9_RICCO	-	-	9.0e-10	64%
FL-Next	tr=Transcription factor, putative; Ricinus communis (Castor bean).	-	-	0.0	72%
Blast2go	transcription factor jumonji domain-containing protein	-	-	2.46446e-11	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3		IPR013129	-	-
Sma3	WRC	IPR014977	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RSE9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 331 aas, your sequence is shorter than subject: 55 - 939

Fln protein: IVRNVLEDTAGLSWEPMVMWRAVRETTKGKFKEETKSVKAIDCLDWCEVDELVV*

Protein Length: 56

Fln nts: TTATAGTTCGGAATGTTCTGGAAGACACAGCGGGTTTAAGTTGGGAGCCCATGGTCATGTGGCGGGCTGTACGGGAGACTACTAAGGGAAAATTTAAAGAAGAGACAAAATCGGTCAAAGCTATTGATTGCCTGGATTGGTGTGAGGTAGATGAATTGGTAGTTTGACCAAAAAAATGCAAATATCAACATTATGCAAACTTGGCGTAGAGGCTTCATAAGACTTCCATCAAGATAACGTTGTGGGATATCTGATATCAAATATTGCTACTTGACGGCCACAAAGATCTTCCTTGTCCTCGTTGAAATCAACATTCATCAA

Fln Alignment:

AllPineV4_c17487___IVRNVLEDTAGLSWEPMVMWRAVRXXXXXXXXXXXXSVKAIDCLDWCEVD
B9RSE9_______________IVRNVLDKTSGLSWEPMVMWRALR-GAKKILKEEAQRVKAIDCLDWCEVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain