SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32511

Length: 476 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene32511
AAATTTGTTCCTTGATTCGGATTTATACTTTCTTCATCTTGAGTGTTGACTTCAGGGCTCCAGTATTTCGAGGATATATGAAAAGAAGCAGTGACTGCAACCAAGATGAAATGGATGAGATCATCAAGCGAGCTTAAGAATAGGGAGCCATTCGGGTTGCTTAATTTCCAACAAGCCCTCTCTAGGGTCCATGCCTATGTCACAACTGTGATGGAAGTGGGAATCAATTGGATGGGGTGCAGGTATCAATGCCCCATGATTTGGTGTCCACAATCATATTATCAACTTGACTATGTATGAGGCCTTCTAGGAAATCAGAGACGGATGGATTCAGGAGCGTAAACTCCAAAACTATGGAAAACAAAACTGGGAGAAAGCTTGCTATGTGCCTACAGCTGAAGATGCATTTGTGGTTGCATTCAGGAAATGGTTGAAGCGATACTCCAATAATGGAGTGGATTGGGGAAAGAGGTTTG

Ace file of the UniGene sp_v2.0_unigene32511 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pheophorbide A oxygenase, putative n=1 Tax=Ricinus communis RepID=B9T570_RICCO	-	-	2.0e-11	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	pheophorbide a oxygenase	-	-	1.01731e-22	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.01731e-22	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEJ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 34 aas, your sequence is shorter than subject: 158 - 480

Fln protein: NLFLDSDLYFLHLEC*LQGSSISRIYEKKQ*LQPR*NG*DHQASLRIGSHSGCLISNKPSLGSMPMSQL*WKWESIGWGAGINAP*FGVHNHIINLTMYEAF*EIRDGWIQERKLQNYGKQNWEKACYVPTAEDAFVVAFRKWLKRYSNNGVDWGKRF

Protein Length: 159

Fln nts: AAATTTGTTCCTTGATTCGGATTTATACTTTCTTCATCTTGAGTGTTGACTTCAGGGCTCCAGTATTTCGAGGATATATGAAAAGAAGCAGTGACTGCAACCAAGATGAAATGGATGAGATCATCAAGCGAGCTTAAGAATAGGGAGCCATTCGGGTTGCTTAATTTCCAACAAGCCCTCTCTAGGGTCCATGCCTATGTCACAACTGTGATGGAAGTGGGAATCAATTGGATGGGGTGCAGGTATCAATGCCCCATGATTTGGTGTCCACAATCATATTATCAACTTGACTATGTATGAGGCCTTCTAGGAAATCAGAGACGGATGGATTCAGGAGCGTAAACTCCAAAACTATGGAAAACAAAACTGGGAGAAAGCTTGCTATGTGCCTACAGCTGAAGATGCATTTGTGGTTGCATTCAGGAAATGGTTGAAGCGATACTCCAATAATGGAGTGGATTGGGGAAAGAGGTTTG

Fln Alignment:

AllPineV4_c17402___IQERKLQNYGKQNWEKACYVPTAEDAFVVAFRKWLKRYSNNGVDWGKRF
D5AEJ2_______________LEERKLQNYGKTNWEKACYVPTAADAFVVAFRKWLKRYANNGVDWGKSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain