SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32465

Length: 381 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene32465
GTTTTGACGTTCTGAGAATGGTGGGCAGAGGAGATGATCATGGCACCATGCATTTTTTGCCCTCCTGGCCGTCCTGGAAAGCTGCTTCACGAGGATGATAAGGTGATTGCATTTGAAGACATCAATCCTGCTGCACTGAGGCATTATTTAGTTATTCCTGTGGATCATATACCAACAGTCCGGGACCTTCAGAGAAGAAAAGAAGATTACACTTTAGGTAAGAGCAATTATGTGTGGAAGACATGCTCAAAATTGGGCAATTCTTGTTGCAGAGAGATGCACCTGGAGCTGTTGAATACAGGTTTGGGTTTCATCAACCTCCATTCAATAGCGTATCCCATCTCCATCTTCATTGCTTTGCCCTTCCTTACATACCAAGAT

Ace file of the UniGene sp_v2.0_unigene32465

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein histidine triad nucleotide-binding 4 [Arabidopsis thaliana] gb\|AAO44058.1\| At4g16566 [Arabidopsis thaliana] dbj\|BAD42969.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD43984.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE83771.1	-	-	2.0e-32	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	histidine triad family protein	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Sulfur metabolism	00920		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Sulfate adenylyltransferase (ADP).	EC:2.7.7.5	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	82%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	82%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	82%
Blast2go	sulfate adenylyltransferase (ADP) activity	GO:0004780	Molecular Function	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Histidine triad motif	IPR011151	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE6

Fln msg: Separated hits, possible frame ERROR between 216 and 234, Distance to subject end: 32 aas, your sequence is shorter than subject: 116 - 142

Fln protein: MIMAPCIFCPPGRPGKLLHEDDKVIAFEDINPAALRHYLVIPVDHIPTVRDLQRRKEDYTxxxxxxxVEDMLKIGQFLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR

Protein Length: 117

Fln nts: GTTTTGACGTTCTGAGAATGGTGGGCAGAGGAG_-_ATGATCATGGCACCATGCATTTTTTGCCCTCCTGGCCGTCCTGGAAAGCTGCTTCACGAGGATGATAAGGTGATTGCATTTGAAGACATCAATCCTGCTGCACTGAGGCATTATTTAGTTATTCCTGTGGATCATATACCAACAGTCCGGGACCTTCAGAGAAGAAAAGAAGATTACACTTTxxxxxxxxxxxxxxxxxxTGTGGAAGACATGCTCAAAATTGGGCAATTCTTGTTGCAGAGAGATGCACCTGGAGCTGTTGAATACAGGTTTGGGTTTCATCAACCTCCATTCAATAGCGTATCCCATCTCCATCTTCATTGCTTTGCCCTTCCTTACATACCAAGAT

Fln Alignment:

AllPineV4_c17327___MIMAPCIFCPPGRPGKLLHEDDKVIAFEDINPAALRHYLVIPVDHIPTVRDLQRRKEDYTLxxxxxxVEDMLKIGQFLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR
D5AAE6_______________MIMAPCIFCPPGRPGKLLHEDDKVVAFEDINPAALRHYLVIPVEHISTVRDLQRRKEDYTLxxxxxxVEDMLKIGQSLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
82	33	66			0.997464
85		66	33		0.997461
86			33	66	0.997461
220			33	66	0.997459
230			33	66	0.997455
231	66	33			0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain