SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32360

Length: 409 nt

UniGene Fasta

>sp_v2.0_unigene32360
ATGGGATGAGATGACAGTCTTCTTTTGATCTCAATAAGAGGGATGCTCGGATATCGCGTTCCACTTTTTTCATCTCGGTTTGGCTGAAATATGTATACGTATTGTGGTCATAATCAGATCTTGGACGAACTTGATCTGGAGATTTGCACCTGTGCAAACATATGCATTCGCTTTACAGATCTTACAAAGGATCTAGACTTTGCTATTATGAAGACCACAAATGATGTTGAGAGGCGAGTAAAAGAAAACATATCTAAAGTATATTTGCAACTTCGGTTTCAAGGCCTCCGGCAGATGTAGCATATTGCATCCATGCTCTTGCAAGATGTCTTTCCAAGACACACAACTGGGCAGTAATGTGCAATCCTTGCTTCTATTTATATGATAGATCCACATCGTTTCTTATAAT

Ace file of the UniGene sp_v2.0_unigene32360

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7TC71_VITVI	-	-	7.0e-11	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	clathrin assembly	-	-	4.7386e-11	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.7386e-11	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.7386e-11	80%

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Overlapping hits, possible frame ERROR between 246 and 237, Distance to subject end: 438 aas, your sequence is shorter than subject: 106 - 547

Fln protein: MYTYCGHNQILDELDLEICTCANICIRFTDLTKDLDFAIMKTTNDVERxxxxxHI*SIFATSVSRPPADVAYCIHALARCLSKTHNWAVMCNPCFYLYDRSTSFLI

Protein Length: 107

Fln nts: ATGGGATGAGATGACAGTCTTCTTTTGATCTCAATAAGAGGGATGCTCGGATATCGCGTTCCACTTTTTTCATCTCGGTTTGGCTGAAAT_-_ATGTATACGTATTGTGGTCATAATCAGATCTTGGACGAACTTGATCTGGAGATTTGCACCTGTGCAAACATATGCATTCGCTTTACAGATCTTACAAAGGATCTAGACTTTGCTATTATGAAGACCACAAATGATGTTGAGAGGxxxxxxxxxxxxxxxCATATCTAAAGTATATTTGCAACTTCGGTTTCAAGGCCTCCGGCAGATGTAGCATATTGCATCCATGCTCTTGCAAGATGTCTTTCCAAGACACACAACTGGGCAGTAATGTGCAATCCTTGCTTCTATTTATATGATAGATCCACATCGTTTCTTATAAT

Fln Alignment:

AllPineV4_c17104___KDLDFAIMKTTNDVERRxxxKHI*SIFA-TSVSRPPADVAYCIHALARCLSKTHNWAV
B8LKD7_______________KDLDIAIVKATNHVERPxxxKHIRIIFAATSATRPRADVAYCIHALARRLAKTHNWAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain