SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32349

Length: 239 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene32349
AAGCAGAGGGCTTTATCAACAGCATGCCCTTTAAACCTGATGCGAGCATATGGTGGGCATTGCTCAGTGCATGCAGAGTTCATGGTAATATGGAGCTAGGAAAATCTGCAGCTGAATCCCTTTTTGAGTTGGAACCAGAAAACCCAGCAATATATGTGCTGTTATCAAATATCTATGCTGCAGCTGGCCGATGGGATGACGTGGCAAAGATTAGAACATTGATGAAAGGGAGGCACATT

Ace file of the UniGene sp_v2.0_unigene32349

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LN01.1\|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070 gb\|AAF79838.1\|AC026875_18 T6D22.15 [Arabidopsis thaliana] gb\|AEE28239.1\| pentatricopeptide repea	-	-	1.0e-20	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	at1g74600-like protein	-	-	1.32756e-30	76%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 79 - 246

Fln protein: AEGFINSMPFKPDASIWWALLSACRVHGNMELGKSAAESLFELEPENPAIYVLLSNIYAAAGRWDDVAKIRTLMKGRHI

Protein Length: 80

Fln nts: AAGCAGAGGGCTTTATCAACAGCATGCCCTTTAAACCTGATGCGAGCATATGGTGGGCATTGCTCAGTGCATGCAGAGTTCATGGTAATATGGAGCTAGGAAAATCTGCAGCTGAATCCCTTTTTGAGTTGGAACCAGAAAACCCAGCAATATATGTGCTGTTATCAAATATCTATGCTGCAGCTGGCCGATGGGATGACGTGGCAAAGATTAGAACATTGATGAAAGGGAGGCACATT

Fln Alignment:

AllPineV4_c17079___AEGFINSMPFKPDASIWWALLSACRVHGNMELGKSAAESLFELEPENPAIYVLLSNIYAAAGRWDDVAKIRTLMKGRHI
D5AAE0_______________ARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
64	25			75	0.996473
65		75		25	0.996473
66	75		25		0.996473
68			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain