SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32342

Length: 1058 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32342

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-2/beta-3 chain n=340 Tax=Eukaryota RepID=TBB2_ARATH	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	tubulin beta-2 beta-3 chain	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	98%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	cell wall	GO:0005618	Cellular Component	98%
Blast2go	protein complex	GO:0043234	Cellular Component	98%
Blast2go	cytoskeleton	GO:0005856	Cellular Component	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: your sequence is shorter than subject: 273 - 445

Fln protein: KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISETMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKSSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFDDEETLEGI*

Protein Length: 274

Fln nts: CAAGGTATCTGATACAGTTGTTGAGCCTTATAATGCTACTTTGTCAGTGCATCAGTTGGTGGAGAATGCAGATGAGTGTATGGTTTTGGACAATGAAGCCCTTTATGACATCTGTTTTAGAACTTTGAAGTTGACTACTCCAAGCTTTGGTGATTTAAATCATCTGATATCTGAAACCATGAGTGGAGTGACCTGTTGCCTGAGGTTCCCTGGTCAGCTCAACTCAGATCTCCGGAAGCTCGCTGTAAATCTCATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGTTTTGCTCCGTTGACCTCCAGAGGCTCCCAACAATACAGATCACTCACTGTTCCTGAGCTGACTCAGCAAATGTGGGATAGCAAGAACATGATGTGTGCTGCAGATCCTCGTCATGGAAGGTACTTGACAGCATCTGCTATGTTTAGGGGAAAGATGAGTACCAAAGAGGTTGATGAACAGATGATTAATGTCCAGAATAAGAGTTCCTCTTATTTTGTTGAATGGATCCCCAATAATGTTAAGTCCAGTGTTTGTGATATCCCCCCCAAAGGGCTAAAGATGTCTTCCACATTTATTGGAAATTCCACCTCTATTCAGGAAATGTTCAGGAGAGTTAGTGAACAGTTCACTGCTATGTTCAGAAGGAAGGCTTTCTTGCATTGGTACACTGGAGAGGGCATGGATGAAATGGAATTCACTGAAGCTGAGAGCAATATGAATGATTTGGTATCAGAATACCAACAATACCAAGATGCAACTGCTGATGAGGAGGGTGAGTTTGATGACGAGGAAACACTTGAGGGAATATAG___TAGTGTATGCACCTGCAACATCCTGTTGCTGCTTGTAAATTTTAACTTTTGCAGCTTTTTTTATTTGGAATAGAGCATTGAATCTGATCAAGGTTTAAAAACTGTATGCGAAGTCGAGTTTTTTTTTTATCAAGCAGAGCTAAGAACTGTTTTTTCTAGCATGTTTCACTATGCAATATCTATGCAAACATTTAAGGTGCTACCCACTGTCAGTTTTAAGTTTAACAAATATAGAAGC

Fln Alignment:

AllPineV4_c17056___KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISETMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKSSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
D5ABQ9_______________KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQYQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
891	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain