SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32319

Length: 1381 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32319

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coffea arabica RepID=E0X627_COFAR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	galactinol synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS25

Fln msg:

Fln protein: MAPEVTAEVLINIAGGKAMAVSGLRTVYSKRAYVTFLAGAGDYVKGVVGLVKGLRKVNSAYPLIVAVLPDVPEEHRQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPEELGQPPSLYFNAGMFVFEPSKLTYDTLLETLRVTPPTAFAEQDFLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSSDSMPDSETLSELQQMTSSSILAAAIPGPNPWFSLSPAA*

Protein Length: 349

Fln nts: CGTCGTGACCTTGGATGGGACGCAGAGTGAGTTCACTTGCTAAGCGGCATTTGCTTCCTTAGTAATTGCGAGGTAAGTTTTTCCGGGTCGTCTTCTTGTTGAGACAGAGATTTGTGCTTCAGGGAGTAGAG_-_ATGGCTCCAGAGGTAACGGCCGAGGTATTGATCAACATTGCCGGAGGTAAAGCGATGGCGGTGAGCGGCCTGCGCACCGTATACTCGAAGAGAGCTTATGTGACGTTCTTGGCTGGCGCAGGCGACTACGTCAAGGGTGTTGTCGGCCTCGTAAAAGGCCTGCGCAAGGTTAATTCGGCGTATCCCCTCATCGTAGCCGTTCTTCCAGATGTTCCCGAGGAACACAGGCAGCTTCTGAGGAGTCAGGGTTGCATTGTTCATGAAATTGAGCCCATCTATCCTCCGGAGAACCAGGTCCAGTTTGCCATGGCTTATTATGTCATCAATTATTCCAAGCTCCGGATATGGGAGTTCGAGGAATACAGCAAGCTTATATACCTGGATGCAGACATTCAAGTGTATGAGAACATCGATCACCTCTTCGATCTTCCGGACGGCCATTTCTATGCTGCGATGGACTGCTTTTGCGAAAAGACGTGGAGCCACACTCGGCAGTACAAGATCGGTTACTGCCAGCAGTGCCCGGAGAAGGTGCAGTGGCCAGAAGAATTAGGACAGCCCCCTTCCCTCTACTTTAATGCGGGCATGTTCGTGTTCGAGCCCAGCAAGCTGACGTACGATACGCTCCTTGAAACCCTAAGGGTCACCCCTCCCACGGCCTTCGCGGAGCAGGATTTCTTGAACATGTTCTTTAACAAGGTGTACAAACCAATTCCCTTGGCCTACAATCTGGTCTTGGCCATGCTATGGCGCCACCCGGAGAACGTGGATTTGGACGGAGTGAAAGTTGTCCATTACTGCGCTGCCGGATCGAAGCCGTGGAGGTACACAGGCAAGGAGGAGAACATGGACAGAGAAGATATAAAGATGTTGGTAAAGAAGTGGTGGGATATCTATAATGATCCGTCCTTGGACTTCAAATCGTCTGACTCGATGCCCGATTCGGAGACGCTCTCAGAGCTGCAACAGATGACTAGCAGCTCCATACTGGCTGCAGCCATTCCTGGACCAAATCCTTGGTTCTCTCTTTCGCCTGCCGCTTAG___GCAGCCGAATTCCGTTATCGGTCGGCAGGAGTTCGATTCTTATGCAATACAAAGTATGCTCGTCAAAGTGGTCACGCAGTTCCGTCTCATTATCTGCGAAACATACCACTGAAATCGTTTGTATTTTTGTATTTATAGCCGAGACGATCGTTGTGCCCTGCAATGCCCTACCGGCCATAAATGAAAATGATAATTGATATTTACGT

Fln Alignment:

AllPineV4_c16998___MAPEVTAEVLINIAGGKAMAVSGLRTVY-SKRAYVTFLAGAGDYXXXXXXXXXXXXXXNSAYPLIVAVLPDVPEEHRQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPEELGQPPSLYFNAGMFVFEPSKLTYDTLLETLRVTPPTAFAEQDFLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSSDSMPDSETLSELQQMTSSSILAA
A9NS25_______________MAPEVPSGAF----GGSK--VGALTSGYNSKRGYVTFLAGNGDYWKGVVGLAKGLRKVNSAYPLVVAMLPDVPEEHREILRSQGCICREIVPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLIETLRITAPTPFAEQDFLNMYFQKMYKPIPLVYNLVLAMLWRHPENVDLDKVKVVHYCAAGSKPWRYTGKEANMQREDIKVLVQKWWDVYDDESLDFKAEDSIPEAETLSDLQQITANSLLAA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
900		12		87	0.992554
1000	85		14		1.0
1006	85			9	0.999726
1007			85	14	1.0
1008	85		9	4	0.999726
1010	85	9			0.999726
1011	85			9	0.999726
1016		9		90	0.999872
1018	90	9			0.999872
1345		70	30		1.0
1357		88		11	0.923564
1398	75	25			0.996473
1404		33		66	0.997464
1406	33	66			0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain